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Publications from the ESD Team

In Press
Bhalla, N., P. Bentley, and C. Jacob, "Evolving Physical Self-assembling Systems in Two Dimensions", 9th International Conference on Evolvable Systems - From Biology to Hardware, York, United Kingdom, In Press.
Bhalla, N., P. Bentley, P. Vize, and C. Jacob, "Programming and Evolving Physical Self-Assembling Systems in Three-Dimensions", Natural Computing, In Press. Abstract
von Mammen, S., D. Phillips, H. Jamniczky, B. Hallgrimsson, and C. Jacob, "Swarm-based Computational Development", Morphogenetic Engineering: Toward Programmable Complex Systems, New York, Springer, In Press. Abstract
2011
Bhalla, N., P. Bentley, P. Vice, and C. Jacob, "Staging the Self-Assembly Process Using Morphological Information", ECAL 2011 - 20th European Conference on Artificial Life, Paris, France, 08/2011.
Shirazi, A. S., S. von Mammen, and C. Jacob, "Hierarchical Self-Organized Learning in Agent-Based Modeling of the MAPK Signaling Pathway", CEC 2011 - IEEE Congress on Evolutionary Computation, New Orleans, USA, IEEE Press, 06/2011. Abstract
Tsang, H., and C. Jacob, "RNADPCompare: An Algorithm for Comparing RNA Secondary Structures Based on Image Processing Techniques", CEC 2011 - IEEE Congress on Evolutionary Computation, New Orleans, USA, IEEE Press, 06/2011.
Shirazi, A. S., S. von Mammen, I. Yazdanbod, and C. Jacob, "Self-Organized Learning of Collective Behaviours in Agent-Based Simulations", ICCS 2011 - 8th International Conference on Complex Systems, Boston, MA, USA, NECSI Knowledge Press, 06/2011. Abstract
Jacob, C., V. Sarpe, C. Gingras, and R. Pajon Feyt, "Swarm-based Simulations for Immunobiology — What can agent-based models teach us about the immune system?", Information Processing and Biological Systems, 1, vol. 11, New York, Springer, 2011. Abstract
2010
von Mammen, S., S. Wissmeier, T. Wong, and C. Jacob, "Artistic Exploration of the Worlds of Digital Developmental Swarms", LEONARDO, issue 10, 10/2010.
Shirazi, A. S., S. von Mammen, and C. Jacob, "Adaptive Modularization of the MAPK Signaling Pathway using the Multiagent Paradigm", Parallel Problem Solving from Nature, Krakow, Poland, Springer, 08/2010. Abstract
Pilat, M., and C. Jacob, "Evolution of Vision Capabilities in Embodied Virtual Creatures", GECCO 2010: Genetic and Evolutionary Computation Conference, Portland, Oregon, USA, 07/2010.
Sarpe, V., A. Esmaeili, I. Yazdanbod, T. Kubik, M. Richter, and C. Jacob, "Parametric Evolution of a Bacterial Signalling System Formalized by Membrane Computing", IEEE CEC 2010: Congress on Evolutionary Computation, Barcelona, Spain, Springer, 07/2010.
Tsang, H., T. Jiang, K. Wiese, and C. Jacob, "A Study of RNA Secondary Prediction Using Different Mutation Operators", IEEE CEC 2010, Congress on Evolutionary Computation, Barcelona, Spain, Springer, 07/2010.
von Mammen, S., T. Davison, H. Baghi, and C. Jacob, "Component-Based Networking for Simulations in Medical Education", MediaWiN 2010: 5th IEEE Workshop on multiMedia Applications over Wireless Networks, Ricione, Italy, 06/2010.
Davison, T., S. von Mammen, and C. Jacob, "EvoShelf: A System for Managing and Exploring Evolutionary Data", PPSN 2010 - 11th International Conference on Parallel Problem Solving from Nature, Krakow, Poland, Springer, 2010.
von Mammen, S., D. Phillips, T. Davison, and C. Jacob, "Swarm Graph Grammars: A Scale-independent, Graph-based Multi-agent Representation", ANTS 2010 - 7th International Conference on Swarm Intelligence, Brussels, Belgium, 2010. Abstract
Khemka, N., and C. Jacob, "VISPLORE: Exploring Particle Swarms by Visual Inspection", Agent-based Evolutionary Search, New York, Springer, 2010.
2009
von Mammen, S., and C. Jacob, "Swarming for Games: Immersion in Complex Systems", EvoGAMES: 1st European Workshop on Bio-inspired Algorithms in Games, EvoWorkshops, Tübingen, Germany, Springer, pp. 293-302, 2009.
Khemka, N., and C. Jacob, "VISPLORE: a toolkit to explore particle swarms by visual inspection", GECCO, Genetic and Evolutionary Computation Conference, Montreal, Quebec, Canada, pp. 41-48, 2009. Abstract
Kendon, T., K. Chatfield-Reed, and C. Jacob, "Building with the beeoids: guided automatic construction using pheromones", GECCO, pp. 1747-1748, 2009.
Moniz, R. D., and C. Jacob, "Fractal Evolver: Interactive Evolutionary Design of Fractals with Grid Computing", EvoWorkshops, pp. 442-451, 2009.
Khemka, N., G. Hushlak, and C. Jacob, "Interactive Evolutionary Evaluation through Spatial Partitioning of Fitness Zones", EvoWorkshops, pp. 432-441, 2009.
2008
Jacob, C., and G. Hushlak, "Evolutionary and Swarm Design in Science, Art, and Music", The Art of Artificial Evolution, New York, Springer, pp. 145-166, 2008.
von Mammen, S., and C. Jacob, "Evolutionary swarm design of architectural idea models", GECCO, pp. 143-150, 2008.
Pilat, M., and C. Jacob, "Creature Academy: A system for virtual creature evolution", IEEE Congress on Evolutionary Computation, pp. 3289-3297, 2008.