[Back to introns by organism]  [Back to home page]

Information for Bu.xe.I3  intron  (Format of information for each intron

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

 

 

[Intron sequence]

 

Sequence from Genbank entry (intron is on the antisense strand). 

The boundaries of the intron are marked as red and ORF is marked 

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

3001 atcgggtaag gccacagcgt cgccgctgcg gcctccccta agaaccgtac gtgcaagttt

3061 ccctgcatac ggctcaagca ttccaaagtc acacgccggt gtgaccggcg tccaccatct

3121 gacgcctgcg cattgtcttg ccgaggttct tccgccgcag cgaagggcgc agacaccgcg

3181 aacgatgctc tttcatgctt ccatctacga agtctttcga cagctttgcg ctggacaccg

3241 gacggaagtc tgcacgcttt cgcgtagggt aatgttgaaa cccttatctg gaccgtttca

3301 gcccagcatt cgctttttcc gtcttctctt acccgcacag tcaacaactc gccttgcgac

3361 tcgtctgcct cgtgggcaac tgtatgggct taccacgttc ccgcttcatc acacgaccgg

3421 gttagggtcc gccttttcgc cggcgggcat ctcgacgacg tgctccgacc tatgaacgga

3481 gcatccgccc gtgcacctgt ttggtaaatg cctgacagca gctttggcat tcttcttctg

3541 acgacgttta tcagcgattc acatgtgtta cccataccgg ccagccttgc gtctcggccc

3601 cgtcgctgct cagagcttct acacgtcacc tcgcggcggc gcatacagtt ggactacgtt

3661 gtcggaaagg cttcatccag cgtcgtcgcc aacgaaagat gctttcctag gccacctctg

3721 gtcgcacagc gggtcctcta tcgtacgaac atgttcgcga ctggacaatg atgaagcgga

3781 catgcactgc gctcttcaac aacgagcctc atgcttcgtg tcgcac

5' end

Intron on sense strand

5' end

  1 gtgcgacacg aagcatgagg ctcgttgttg aagagcgcag tgcatgtccg cttcatcatt 

 61 gtccagtcgc gaacatgttc gtacgataga ggacccgctg tgcgaccaga ggtggcctag 

121 gaaagcatct ttcgttggcg acgacgctgg atgaagcctt tccgacaacg tagtccaact 

181 gtatgcgccg ccgcgaggtg acgtgtagaa gctctgagca gcgacggggc cgagacgcaa 

241 ggctggccgg tatgggtaac acatgtgaat cgctgataaa cgtcgtcaga agaagaatgc 

301 caaagctgct gtcaggcatt taccaaacag gtgcacgggc ggatgctccg ttcataggtc 

361 ggagcacgtc gtcgagatgc ccgccggcga aaaggcggac cctaacccgg tcgtgtgatg

421 aagcgggaac gtggtaagcc catacagttg cccacgaggc agacgagtcg caaggcgagt 

481 tgttgactgt gcgggtaaga gaagacggaa aaagcgaatg ctgggctgaa acggtccaga 

541 taagggtttc aacattaccc tacgcgaaag cgtgcagact tccgtccggt gtccagcgca 

601 aagctgtcga aagacttcgt agatggaagc atgaaagagc atcgttcgcg gtgtctgcgc 

661 ccttcgctgc ggcggaagaa cctcggcaag acaatgcgca ggcgtcagat ggtggacgcc 

721 ggtcacaccg gcgtgtgact ttggaatgct tgagccgtat gcagggaaac ttgcacgtac 

781 ggttcttagg ggaggccgca gcggcgacgc tgtggcctta cccgat

3' end

[top]


[Intron and flanking sequence]

 

2701 accatttttg cccagcagtc gctggagttc acgaatctgt ttcatcgctt cggccaggtc

2761 ggatgccggc acgacctgct cgccagcact aactgctgac aggcttccgt cctggtagag

2821 cttgcgccag gcgaacacct ggtttgcatt tacctgatga cgacgggcaa ctccggatac

2881 ggttgcgccg ggctcgaagg tctcgcgcac tatcgcaagc ttctcctcga cagagcgccg

2941 gcggcgctgt tcgggctggg tcagaacttc aatgggttcc acgttagagc cgggcttaaa

3001 atcgggtaag gccacagcgt cgccgctgcg gcctccccta agaaccgtac gtgcaagttt

3061 ccctgcatac ggctcaagca ttccaaagtc acacgccggt gtgaccggcg tccaccatct

3121 gacgcctgcg cattgtcttg ccgaggttct tccgccgcag cgaagggcgc agacaccgcg

3181 aacgatgctc tttcatgctt ccatctacga agtctttcga cagctttgcg ctggacaccg

3241 gacggaagtc tgcacgcttt cgcgtagggt aatgttgaaa cccttatctg gaccgtttca

3301 gcccagcatt cgctttttcc gtcttctctt acccgcacag tcaacaactc gccttgcgac

3361 tcgtctgcct cgtgggcaac tgtatgggct taccacgttc ccgcttcatc acacgaccgg

3421 gttagggtcc gccttttcgc cggcgggcat ctcgacgacg tgctccgacc tatgaacgga

3481 gcatccgccc gtgcacctgt ttggtaaatg cctgacagca gctttggcat tcttcttctg

3541 acgacgttta tcagcgattc acatgtgtta cccataccgg ccagccttgc gtctcggccc

3601 cgtcgctgct cagagcttct acacgtcacc tcgcggcggc gcatacagtt ggactacgtt

3661 gtcggaaagg cttcatccag cgtcgtcgcc aacgaaagat gctttcctag gccacctctg

3721 gtcgcacagc gggtcctcta tcgtacgaac atgttcgcga ctggacaatg atgaagcgga

3781 catgcactgc gctcttcaac aacgagcctc atgcttcgtg tcgcaccata ggcgtaagac

3841 tacctcaaag tttaagcatt acctcgtgtc cggttatcgc cggggccggc ccaaagccga

3901 acaaggttgt tctggttgcc tgcatgagaa aactgctggc ttatcctcaa cgccatcgca

3961 aaaacaggaa agccatggga cgaattcatc cacacggctt gactggtaag acagttgctc

4021 actattcctg acaggccctc ggcgcgcgca ccatagcaca cgctgccgaa caggctcagt

4081 ccggcatgag tcttgcgctc agcacaatgc cccgttcgtc aatccataca gtttctagga

[top]


[ORF sequence]

 

This intron is ORF-less.

[top]


[Secondary structure]

 

                                                    

[top]