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Information for OYPI2 intron  (Format of information for each intron

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

 

 

[Intron sequence]

 

Sequence from Genbank entry (intron is on the antisense strand). 

The boundaries of the intron are marked as red and ORF is marked 

as blue, with start and stop codons underlined.

Intron on antisense strand

3' end

                                                   atcgcgatag aaacaaaacg

552241 ccttaattat tagctaataa ttaggttttt ttgagcctcg cacaacaccg tacaagcaag

552301 tttccaagca tacagcgttt atataaaata tatttcttct ttcgccttgt atttggtttt

552361 cccaaattcc ttggtaagtc agtccactta tgcattccag ctaagctttg aatttcttac

552421 gactactacg attctgcttt ttccttgagc ctaaacactt aagtttattt tagatgcttt

552481 tatactttta tcaaataact ttcttttagc aaataacttt taggaagata gaagttactc

552541 taatttctta ccttaatagt tttaggagag ataaccacaa ttaatataca aaaataaaaa

552601 aattatgtgg ttgtggtggt tttaggttta gcaattttgc ttgccactta aatcaataag

552661 tgttagtaaa ttttatatac gcaaaaaata tataaactgc cctaaaatat aaggtatcaa

552721 ctgtttttcc ttatagctac tgcccgtttt tttctcttag gcttattgca aagcttttcc

552781 atgactattt tcaactcgca aatccaaacg ataaacagtt tctcgttttt ttgcttttat

552841 tttctgctat aatctatctt gctttcacaa aatagaccaa aaatatgttg tactgcatta

552901 ctaattgcag ttgtaagtgg ttaatttact aagaaattag gcatctttct cgccc

5' end

Intron on sense strand

5' end

  1 gggcgagaaa gatgcctaat ttcttagtaa attaaccact tacaactgca attagtaatg 

 61 cagtacaaca tatttttggt ctattttgtg aaagcaagat agattatagc agaaaataaa 

121 agcaaaaaaa cgagaaactg tttatcgttt ggatttgcga gttgaaaata gtcatggaaa 

181 agctttgcaa taagcctaag agaaaaaaac gggcagtagc tataaggaaa aacagttgat 

241 accttatatt ttagggcagt ttatatattt tttgcgtata taaaatttac taacacttat 

301 tgatttaagt ggcaagcaaa attgctaaac ctaaaaccac cacaaccaca taattttttt 

361 atttttgtat attaattgtg gttatctctc ctaaaactat taaggtaaga aattagagta 

421 acttctatct tcctaaaagt tatttgctaa aagaaagtta tttgataaaa gtataaaagc 

481 atctaaaata aacttaagtg tttaggctca aggaaaaagc agaatcgtag tagtcgtaag 

541 aaattcaaag cttagctgga atgcataagt ggactgactt accaaggaat ttgggaaaac 

601 caaatacaag gcgaaagaag aaatatattt tatataaacg ctgtatgctt ggaaacttgc 

661 ttgtacggtg ttgtgcgagg ctcaaaaaaa cctaattatt agctaataat taaggcgttt 

721 tgtttctatc gcgat

3' end

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[Intron and flanking sequence]

 

551881 atatatttca tcatttaatg tggatattga tttcatatat gaaaaaatat ttgtaatttt

551941 gtctaaaaca ttatcgtact ctttagaaac ttctctaaat tttaatgttt ttgctgtcaa

552001 tatttcaaat gatgttaaaa tactattaac atctgtattt aatttttgta cccaaatata

552061 tatttgttcc aaataatcaa ttacttgttg ttgggctcct acttcttttt ttttaattaa

552121 atctaggata tttataaaaa tgggatcatt taaatatttt tgaatttctg tttgattatt

552181 aactgctaat ttattaattt cagttttgat ttgagtaatt atcgcgatag aaacaaaacg

552241 ccttaattat tagctaataa ttaggttttt ttgagcctcg cacaacaccg tacaagcaag

552301 tttccaagca tacagcgttt atataaaata tatttcttct ttcgccttgt atttggtttt

552361 cccaaattcc ttggtaagtc agtccactta tgcattccag ctaagctttg aatttcttac

552421 gactactacg attctgcttt ttccttgagc ctaaacactt aagtttattt tagatgcttt

552481 tatactttta tcaaataact ttcttttagc aaataacttt taggaagata gaagttactc

552541 taatttctta ccttaatagt tttaggagag ataaccacaa ttaatataca aaaataaaaa

552601 aattatgtgg ttgtggtggt tttaggttta gcaattttgc ttgccactta aatcaataag

552661 tgttagtaaa ttttatatac gcaaaaaata tataaactgc cctaaaatat aaggtatcaa

552721 ctgtttttcc ttatagctac tgcccgtttt tttctcttag gcttattgca aagcttttcc

552781 atgactattt tcaactcgca aatccaaacg ataaacagtt tctcgttttt ttgcttttat

552841 tttctgctat aatctatctt gctttcacaa aatagaccaa aaatatgttg tactgcatta

552901 ctaattgcag ttgtaagtgg ttaatttact aagaaattag gcatctttct cgcccttttg

552961 caataaatct tgacattgta tttttatttg ttctgtttga ttctctttag tttcaattag

553021 agttatcacg ttttcaatat catcatcttg gtcagcaaaa attaaataat tgtgatttaa

553081 aaatagcaaa atagcccaaa agccagcaaa tattaacagt tttgctttat gttttttgag

553141 ttttaccata atttatatat cacctgcttt ctttatatga ttttatttcc aacttaacat

553201 tgaaataaaa tttaaaaaat taaaaaggca aatacaaaaa tagaaaataa ataaatttta

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[ORF sequence]

 

This intron is ORF-less.

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[Secondary structure]

                                                   

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