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Information of Th.e.I10-1 intron  (Format of information for each intron)

[Intron sequence]

[Intron and flanking sequence]

[ORF sequence]

[Secondary structure]

Note: Multiple Insertions
Th.e.I10-1    BA000039 (1578164-1579013)
Th.e.I10-2    BA000039 (2169568-2170417)

[Intron sequence]

Sequence from Genbank entry (intron is on the antisense strand). 

The boundaries of the intron are marked as red and ORF is marked 

as blue, with start and stop codons underlined. 

Intron on antisense strand

3' end

         gtcgggt agcagggggg cattgctgcc ccctagcccc ctaggaaccg gacgtgcaag
77821 tttccccgca tccggctcga gccccccaag acccctcatt taagaggaac cggttgtgca
77881 tgcaaccttt acgatactca tctacagcct ctctaccttt ggtggaaggt ttggtggaag
77941 gttggtgacc gcaccagtga ctcaagatca ccgccatttg ctttgtcacc attagggagg
78001 ttctgtaggt tttcccgtaa tcggggacca gcgggaagtc tgccctcttt cgagtcggat
78061 gatgttgaat gtcctgccaa cattctcaat ccctatctag cccattacag gctagcattc
78121 gctttttccc gcctcctcta cccgcaccct catcagcttt ccttgcggtt tgcctgcctt
78181 gaatgttcaa ggcgaagata cgggcttacc acgttccgct tagttgacac gaggggttag
78241 gtgctgacta tgccccgacg gatcaacatc cccgtacacc gacgtggaag cgttgtatct
78301 tgtccgcttg ccgttttggc tcaggcctgt cagcgtcttt ggcctgtatg tgataacggg
78361 gcttctaacg tcacttcact tgcgttcacc atacccttaa gcctagctcc ctatcacctg
78421 acgctggtga agttgcttcc tcctcacgga ttcagctcca accttacggt tcgggctacg
78481 ttgtcgggag ggcttcatac ctgaccgttg ccagtcacgc atgcctccct aggctacagc
78541 tgggggaaca accggtccca ttctagcttg ttgggctagt gggtccatca acttaagcgg
78601 cttcgtgtcg cac

5' end  

Intron on sense strand

5' end

  1 gtgcgacacg aagccgctta agttgatgga cccactagcc caacaagcta gaatgggacc 

 61 ggttgttccc ccagctgtag cctagggagg catgcgtgac tggcaacggt caggtatgaa 

121 gccctcccga caacgtagcc cgaaccgtaa ggttggagct gaatccgtga ggaggaagca 

181 acttcaccag cgtcaggtga tagggagcta ggcttaaggg tatggtgaac gcaagtgaag 

241 tgacgttaga agccccgtta tcacatacag gccaaagacg ctgacaggcc tgagccaaaa 

301 cggcaagcgg acaagataca acgcttccac gtcggtgtac ggggatgttg atccgtcggg 

361 gcatagtcag cacctaaccc ctcgtgtcaa ctaagcggaa cgtggtaagc ccgtatcttc 

421 gccttgaaca ttcaaggcag gcaaaccgca aggaaagctg atgagggtgc gggtagagga 

481 ggcgggaaaa agcgaatgct agcctgtaat gggctagata gggattgaga atgttggcag 

541 gacattcaac atcatccgac tcgaaagagg gcagacttcc cgctggtccc cgattacggg 

601 aaaacctaca gaacctccct aatggtgaca aagcaaatgg cggtgatctt gagtcactgg 

661 tgcggtcacc aaccttccac caaaccttcc accaaaggta gagaggctgt agatgagtat 

721 cgtaaaggtt gcatgcacaa ccggttcctc ttaaatgagg ggtcttgggg ggctcgagcc 

781 ggatgcgggg aaacttgcac gtccggttcc tagggggcta gggggcagca atgcccccct 

841 gctacccgac
3' end

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[Intron and flanking sequence]

77281 cactatgcca cgccaacgga aaccgctgac gtgattctct ggggcagcga tcagccggaa
77341 accgtcagtt ggcaatttcc ttccatggat acctgctggc taggggagtt aatggcaggg
77401 gtgattcggc agtgctatcc ccacctcaac gtcatggtct ggaactgtcg agttgatctg
77461 aaccacaggc aacacctatg ggacttaacg gaaaaacagt tagagcaata tattgagagt
77521 ttgccagaca aagctgctgg caattggcag ttgcaaattc aaaccaaggg gtctgtgccc
77581 caaattgcag atgctctgaa cttgacatcc tccccccgct aaagcagggg gattcccaaa
77641 atcacttttg ggactttctg cttcttcgca gttgccctct agacgtatgc ctatcaggtc
77701 ttacacccgc tccacagact gtaaccgtgt gtcccacggc caaaatattc cgagcagcat
77761 ttagtcgggt agcagggggg cattgctgcc ccctagcccc ctaggaaccg gacgtgcaag
77821 tttccccgca tccggctcga gccccccaag acccctcatt taagaggaac cggttgtgca
77881 tgcaaccttt acgatactca tctacagcct ctctaccttt ggtggaaggt ttggtggaag
77941 gttggtgacc gcaccagtga ctcaagatca ccgccatttg ctttgtcacc attagggagg
78001 ttctgtaggt tttcccgtaa tcggggacca gcgggaagtc tgccctcttt cgagtcggat
78061 gatgttgaat gtcctgccaa cattctcaat ccctatctag cccattacag gctagcattc
78121 gctttttccc gcctcctcta cccgcaccct catcagcttt ccttgcggtt tgcctgcctt
78181 gaatgttcaa ggcgaagata cgggcttacc acgttccgct tagttgacac gaggggttag
78241 gtgctgacta tgccccgacg gatcaacatc cccgtacacc gacgtggaag cgttgtatct
78301 tgtccgcttg ccgttttggc tcaggcctgt cagcgtcttt ggcctgtatg tgataacggg
78361 gcttctaacg tcacttcact tgcgttcacc atacccttaa gcctagctcc ctatcacctg
78421 acgctggtga agttgcttcc tcctcacgga ttcagctcca accttacggt tcgggctacg
78481 ttgtcgggag ggcttcatac ctgaccgttg ccagtcacgc atgcctccct aggctacagc
78541 tgggggaaca accggtccca ttctagcttg ttgggctagt gggtccatca acttaagcgg
78601 cttcgtgtcg cactccacgc ctcacattat agcgattatt ctgtgagtaa cacaactata
78661 cttggcagtc acagactatc gctcctatcc ctcccctccc taaaggaagg ggtctctcgg
78721 aggtaaagat gattcctaca gagccgcaac cgttctttga tctcgctcat ccatctgcgc
78781 gtggcgctga atattttgaa gtggtgtctt taggtgcggt cttttggcca ctggagcaac
78841 agcggattgc cgaagtatgg aaacggggtg actttactgc cgaaaaggta ctcctggccg
78901 cccatcgcga tcgctatgag gcgctctatc aattggccga tcgcctttca ttagtaacca
78961 actggaggat tcaggatttt ctcgagggaa ttcaggggaa aggctggctg gatcaaaagc
79021 ctaccaaagc agtgattcac aaagatcaac gacagcagtg gtgtgaggca acggtcaatc
79081 gttgtcccaa tagtgcaaca gccaacagca agttcctgaa aatttgggaa tttgagctac
79141 tgtctgagct tgcagcagga gaacgatacc ctagccttta tgcaatttgc ccagatgctt

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[ORF sequence]

This intron is ORF-less.

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[Secondary structure]

Essentially the same as Th.e.I1, please see the structure of Th.e.I1.

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