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Information of Th.e.I9 intron (Format of information for each intron)
[Intron and flanking sequence]
Sequence
from Genbank entry. Intron is identified in red.
The ORF
is identified in blue with start and stop codons
underlined.
5' end
1 gtgcgacacg aagccgctta agctgactgt cccactagcc caacaagcta gaatgggacc
61 ggttattccc ccagctgtag cctagggagg catgcgtgac tggcaacggt caggtatgaa
121 gccctcccga caacgtagcc cgaaccgtaa ggttggagct gaatccgtga ggaggaagca
181 acttcaccag cgtcaggtgg tagggagcta ggcttaaggg tatggtgaac gcaagtgaag
241 tgacgttaga agacccgtta tcacatacag gccaaagacg ctgacaggcc tgagccaaaa
301 cggcaagcgg acaagataca acgcttccac gtcggtgtac ggggatgttg atccgtcggg
361 gcatagtcac cacctaaccc ctcgtgtcaa ctaagcggaa cgtggtaagc ccgtatcttc
421 gccttgaaca ttcaaggcag gcaaaccgca aggaaagctg atgagggtgc gggtagagga
481 ggcgggaaaa agcgaatgct agcctgtaat gggctagata gggattgaga atgttggcag
541 gacattcaac atcatccgac tcgaaagagg gcagacttcc cgctggtccc cgattacggg
601 aaaacctaca gaacctccct aatggtgaca aagcaaatgg cggtgacctt gagtcactgg
661 tgcggtcacc aaccttacac acaaggtaga gaggctgtag atgagtatcg taaaggttgt
721 acatacaacc ggttcctcct aaaagaggag tcttgggggg ctcgagccgg atgcggggaa
781 acttgcacgt ccggttccta gggggctagg gggcagtaat gcccccccgc tacccgac
3' end
[Intron and flanking sequence]
258241 caaataccca aaactgaaat caagggagaa atagggagca cttttttcac caagttgggg
258301 gctttggtat tcaaagctaa gccgacaaga atgggcagca gtaccacttg gacagtgccc
258361 caaaagagtt gcagcgcgtt tacttcaacg tattgacccg ccagtagctg agttaagagg
258421 ggtgtcaaaa taattgctgc caatgttgag cacagggtca tgaccactga caacgccaca
258481 tgggcgcggg caataaacgt caccacattg gaggccgttc caccagggca gcaagcgact
258541 aaaatgagcc cgacagcaaa gggtgcggac aactgatata actgtgccac cagccatccc
258601 gccgtcggca taatcacgta ctgagcaata aatccgaggg caaccgtgcg aggcattaat
258661 cccacggctt ggaactcccg ccaactcagc gtgatcccca tccccagcat cacgatcatc
258721 tttacctccg agagaccccc tcgtttaggg aggggaggga taggagcgat agtctgtgac
258781 tgccaagtat agttgtgcta ctcacagaat aatcgctata aggtgaggcg tggagtgcga
258841 cacgaagccg cttaagctga ctgtcccact agcccaacaa gctagaatgg gaccggttat
258901 tcccccagct gtagcctagg gaggcatgcg tgactggcaa cggtcaggta tgaagccctc
258961 ccgacaacgt agcccgaacc gtaaggttgg agctgaatcc gtgaggagga agcaacttca
259021 ccagcgtcag gtggtaggga gctaggctta agggtatggt gaacgcaagt gaagtgacgt
259081 tagaagaccc gttatcacat acaggccaaa gacgctgaca ggcctgagcc aaaacggcaa
259141 gcggacaaga tacaacgctt ccacgtcggt gtacggggat gttgatccgt cggggcatag
259201 tcaccaccta acccctcgtg tcaactaagc ggaacgtggt aagcccgtat cttcgccttg
259261 aacattcaag gcaggcaaac cgcaaggaaa gctgatgagg gtgcgggtag aggaggcggg
259321 aaaaagcgaa tgctagcctg taatgggcta gatagggatt gagaatgttg gcaggacatt
259381 caacatcatc cgactcgaaa gagggcagac ttcccgctgg tccccgatta cgggaaaacc
259441 tacagaacct ccctaatggt gacaaagcaa atggcggtga ccttgagtca ctggtgcggt
259501 caccaacctt acacacaagg tagagaggct gtagatgagt atcgtaaagg ttgtacatac
259561 aaccggttcc tcctaaaaga ggagtcttgg ggggctcgag ccggatgcgg ggaaacttgc
259621 acgtccggtt cctagggggc tagggggcag taatgccccc ccgctacccg acaaaggctt
259681 tcagttaccg cttctaccca acgaccgagc aggaatccct gcttcggaga acattgggct
259741 gtgttcggtt ggtttataat cgagcactgg cagcgagaac agaagcctgg tatgaacgaa
259801 aagagagact tgactacgtt caaacctctg ccttgcttac tcagtggaag aagcaagatg
259861 accttcagtt tttgaatgag gttagctgtg tccccttgca gcaggcattg agacatctgc
259921 aatctgcttt cactaacttt tttgcaggtc gggcaaaata tcccaacttc aaaaagaaac
259981 gcaatggcgg tagcgcagaa ttcaccaagt ctgcttttag gtggaaagac ggaaaagtat
260041 tcttggcaaa gtgcaacgaa ccgctgaata ttccctggtc gagacggctt ccagatggtg
260101 ttgaaccatc cacggtgacc atcaggctta accctgctgg acagtggtac atcaatctga
This intron is ORF-less.
Essentially the same as Th.e.I1, please see the structure of Th.e.I1.