Allomyces macrogynus cox1.I3

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Information of Bryopsis maxima rbcL.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcga cacgaaagtc gctgtattta gtagatattt acaaatctta tcctagcatt

1261 cggatattcc catactttgg gtgcaatcct ataataataa aagattgtgc taagccttag

1321 taaaagccaa aacttatgat gttctcgtaa tataaggcaa gggaaaatag aatagagttg

1381 gtttaacggc ctcgtaaaga tgagaacagc ccaaaagggt taactacttc gctaacagac

1441 tgaatggatc gtcgtggtca ttcaggaatg cttctaagaa gtcggggtga ttgtctccaa

1501 aactattcta tgtatctaaa tatagtggaa cgtgggaaat ccaaaaatct ccctatgggt

1561 aggtgtttag caataaacac taaaagattt tggattgcgg attgtcctgt tatgtaagaa

1621 ttccatgcaa aggaataatg aacccatagc aaaaaggaaa atatgggatg cgaattactc

1681 agtaaaaagt aagttctaat acagaaaaca gcccatatat aactggaatt caggaaagtt

1741 atttccaaca aatgaggaca aggtcttatt tcataaaatt tatattaaaa taacaaagaa

1801 caaaggagat tgacttatga tagtactttg ggagactcac cagagtggat accatccaat

1861 tggaacacca caatggcaca agttcggaat ttaaaatata gaatctttat ggcgaaacta

1921 gaaggtaatc ggagaacatt acgaagatta caaaaattga tgttagatag tcgccacaag

1981 atactcctgt ccgtgagaag ggtaacggtg attaatgatg gaaaaataga ttcctgggat

2041 agataaagtt ctaataaaag ataaaaatga cagaatggta ttggtagaaa aactctataa

2101 aatgaatatt ttacaatacg agcctaagcc cgtgaagaga atacaaatac caaaatcaaa

2161 cgggaaaact agacctctgg gaatccctac catactagac agaatgtata caagccatag

2221 tgctaaatgc attgcaacca gaatgggaag cctgttttga agcaaatagt tacgctttcg

2281 cccaggaaga agtgcacacg acgcgattgg tcgggtgttc aacgtactaa gtgttaagtc

2341 aaatggaaac aataataaac catggatatt agatgcacat atcgaagggt ttttcgataa

2401 catatgtcat caagacatat tagaaaaact cgacaacttc ccagccaaaa agcttataaa

2461 ccgttggtta aaagcaggct acatggaaga agatatcttt tcaaaaactg agaaaggtac

2521 accgaaagga tccattatca gcccactact cgcaaacatc gcattgtatg agttagagga

2581 atttcttaaa gcatcaccag actcaacagg tcgagtgagg gggaatagag tatacgttcg

2641 atatgcagac gacttcatag tcatatgcgc atcaaaaacg gaagctcaac aaaccaagaa

2701 acaaatctca ggttggttaa aaaccaaagg tctcagattt gcgccaaata aaataaaaat

2761 cagtgatatt gataaaggct ttgaattttt aggtgtagat attcgccatg taagtacgaa

2821 tgcctcgcat aaaaccaaag gtaaaatgct tctgatacgc ccctctacaa aggctatcga

2881 caaaataaca caaaaactga aaaaagaatg gtttctcccg agaagtaaac tcatagaaac

2941 ggtactcaca cgtctaaacc caatgatcac gggctgggca aattaccatc aaaaattttc

3001 atccacggat atctttaata aattagacaa ctggacattc cagaaaagtt ggaattatgc

3061 atccagaatg cacgccaaca aatcgaaaca ttggatttat gataagtatt atgggaactt

3121 caatttaaac cgaaaggacc gttggatatt cggagataag gaaacaggaa gataccttaa

3181 aaagtttgct tggttcaata taaagagaca cgtggtggta aaaggctaca attccccttg

3241 tgacccaagg ttacaagaat actgggaaga acgccggaaa actctctata aagtcagtag

3301 aacctaatcg gaacaaataa tcgcgaaaaa tcaagattat agatgtccag tttgtgaaca

3361 cccgatgaga atctacagaa acatcaccta atttcccaac gaaatataaa aattgaaaat

3421 tattggaacc tagtatatat catagacaat gccatcaatt ctgacattcc aacccgaaaa

3481 ttgaacgaga attacatgga aaattttatt cgaggaaaat cgtgttcgta agcgtctaac

3541 aaagaatccg cgaacacaca tagaaagatt aaaactcgaa cttttagaac ataaggcttg

3601 agccgtatgc ggggagactc gcacgtacgg ttcttagggg ggaattggtg gaaacgcctg

3661 acctacccga c

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

Note: The published size is 274 amino acids; three frameshifts add 203 amino acids with

similarity to group II intron-encoded proteins

cgtatc cacttgattt

721 atttgaagaa ggctcggtaa caaacttatt tacatcaatt gttggaaacg tatttggttt

781 taaagcctta cgagctcttc gtttggaaga tttacgtatt tcagttgctt atgctaaaac

841 attccaaggt cctccacatg gtattgaagt cgagcgtgac aaattaaata aatatggacg

901 tccattactt ggttgtacaa ttaagcctaa attagggtta tcagctaaaa attatggtcg

961 agcagtttat gaatgtttac gaggtggtct tgatttcacc aaagatgatg agaatgtaaa

1021 ttcacaacct tttatgcgtt ggcgtgatcg tttcttattt gttgctgaag caatttataa

1081 atctcaagca gaaacaggtg aaattaaagg tcattactta aatgcaactg cagcaacttg

1141 tgaagctatg cttcaacgtg cacaatgtgc taaagaatta ggtgtgccta tcataatgca

1201 tgacgtgcga cacgaaagtc gctgtattta gtagatattt acaaatctta tcctagcatt