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Information of Euglena deces psbC.I4 intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

3' end

       gtgtgctt ctgttatttt tttttatttc taatttaatt ttttgtgtgc tttaattatt 

  61 tatatttaag atttaatgtt tttattttta ttactttttt atattttact ttcgtttatt 

 121 attatcttta atatgtctat gattttttaa cttctaagat tttatcatgg gaaaaagctt 

 181 cttcttttat ttttaaactt caaaaacgat tgtttaaaag tgtttacgtt catgatttac 

 241 aaaaaatttt ttctattcaa aaattaattt taaactcaaa ttcagctcgt ttgttggcta 

 301 taagagaagt tacgcaaata agttatatta aaaaaatagc tggtgttgat ggtaagactt 

 361 ctttaacttt tttagaaagg tttgaattaa atgagaattt aaaatttaat ttccaaaatt 

 421 ggtttccaca atcattgaaa aaagtagatt ttgtttcaaa agaagaaatt acggtggaat 

 481 taaaaatttc tactatttct gatcgtgctt ggcaagcatt gataaaactt gctatagaac 

 541 cagcgcatga agctattttt agtccttgtt tttttggttt tcgtttaagc cgttctattt 

 601 atgaagttca aaattctttt tttcttaact tatcagctga ttcttttggc ttacaaaagc 

 661 gtattttaaa attgaattta aataaaagtc tttcttttta taattataat tatttggttg 

 721 ataaaattat atctccgaga agtatcaagt tgggaatttt tagaagtttg aaaaaaggta 

 781 ttattttgtc atatttacaa gaagaaagat taactaaata tgagttttgt aatttactct 

 841 ataacgtttt tttcgatggg cttgaacaat ttggcaattg cattcgtttt tcaaataccg 

 901 ttattttttt tcttaaacct tttgataatg aaaaaaagtt gactgaaact attaaaaaat 

 961 ttttatatga tttaggtctt tcttctctgg actttaattt tgatattatt tcagtgttaa 

1021 agggattcga ttttctttat tggaatttta aacttgcaaa gaatggagat tttctttgta 

1081 caccttcttt gcaatattat aagatatttt taaaacgtgt taaaagaatt ataaataatt 

1141 ctaattatgg ttcggagatt aaagtctcta aactttcacc aataattcga gaatggtatc 

1201 tatataataa attttcaaat ttgaaaggag ttcgtttttc tttattttat attaagaaaa 

1261 gatgttttag attatttaat aaagagtcta agcaagattt ttattctagt aaaagacttg 

1321 ttgataattg ttttttaaat tcgaatacat tttacaatga aaattttgaa gataaaattt 

1381 tttcatcacc atatttccgt cattttattt tttcgaacaa atatcatttt gttaagcttc 

1441 ataaagatgt tttaattaat aattactatt gtattcattg tggaatgaac ttttctttat 

1501 attaaatttt tatagcaaaa taattctttt ttttttgata ttctgggttt taacaaatac 

1561 cttttttaat ttagatattt attatttgtt ttagttttaa aatattgtat ttaatgtaca 

1621 ttaatttatt c

 

                                                                   

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[intron& flanking sequence]

 

No flanking sequence available for this intron 

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[ORF sequence]

 

453 a.a.

 

FLTSKILSWEKASSFIFKLQKRLFKSVYVHDLQKIFSIQKLILNSNSARLLAIREVTQ

ISYIKKIAGVDGKTSLTFLERFELNENLKFNFQNWFPQSLKKVDFVSKEEITVELKIS

TISDRAWQALIKLAIEPAHEAIFSPCFFGFRLSRSIYEVQNSFFLNLSADSFGLQKRI

LKLNLNKSLSFYNYNYLVDKIISPRSIKLGIFRSLKKGIILSYLQEERLTKYEFCNLL

YNVFFDGLEQFGNCIRFSNTVIFFLKPFDNEKKLTETIKKFLYDLGLSSLDFNFDIIS

VLKGFDFLYWNFKLAKNGDFLCTPSLQYYKIFLKRVKRIINNSNYGSEIKVSKLSPII

REWYLYNKFSNLKGVRFSLFYIKKRCFRLFNKESKQDFYSSKRLVDNCFLNSNTFYNE

NFEDKIFSSPYFRHFIFSNKYNFVKLHKDVLINNYYCIHCGMNFSLY

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[secondary structure]

 not available

 

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