Allomyces macrogynus cox1.I3

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Information of Euglena gracilis psbC.I4 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

18661 tgtgggggtg gttttttatg atttaaagtt tttgttttta tatttttgtt gttattttct

18721 ttaatgattt tttatgaaat ttttcaagtt tctttttatc aaaattttct ttgggaaaaa

18781 tctgttcgtt tattatttaa agttcaaagg cgtttattta aagtttctta tattcatgat

18841 aagaaaaatt tatatgagct tcaaaaactt atttttcaat ctaattgtgc aagattgtta

18901 gctattcgcg aagtaacaca attgagtttc aataaaaaaa tttcaggagt tgatggaaaa

18961 actactttaa attttttgga aagatttgaa ttaaacgaat atttaagaaa aaattggaat

19021 aattggaagc ctcaatcttt aaggaaaaga tgtgttttcg atttaaatga aaatttaatc

19081 tcagatacaa tttcgactat ttcggatcgt tcctggcaag ttttgattaa atttgccctt

19141 gaacctgttc atgaagcttt ttttcatcca tttaattttg gttttcgtta taatgttcct

19201 atttataagg ttcagcaagc tattttgctt aatttatcaa atatttcgtt tggtagtaaa

19261 aaaagaattt taaaagttga gttaaattgt aatttttcta tttttaatta tgattatttg

19321 atgaaaaaat taattgctcc gagaaatatt aaattaggga tttttcgttt gttggaatta

19381 ggtttcaatt tgcactttcc agaaaatgag tgtcaaattt cgacttttag ttctttgtta

19441 ttaaacgtta tgttaaatgg agttgaaaac gttcataatt gtgtgcgcta tggttattat

19501 atgttatttt ttttacgacc catggataat gaaaaaatac ttgcaaatca aattctctct

19561 ttactttata cgcgaggtat aaaaaagaat tcttctaaat ttttacttgt atccaacact

19621 aagggttttg attttttagg ttggcatttt aaattttcgg aaaaagttaa aaatggtatt

19681 tctgcaattc ctagccttaa taattatcaa tttttcctta atcgagttaa aagaatagtt

19741 aacaattcaa attatggttc tgtcgttaaa gcctctaagt tatatccagt aataaagaat

19801 tggagagagt atcacaaata ttcggattta agaagtttat catattcact tttttttgta

19861 aaaaaacacg ctttctctgc ttttaattca gaatctaaac aagattttta ttcttctaaa

19921 cgattattat ttaaatcttt tttagtttct gaatcgttca atactgtatc aaaaaaatat

19981 aactttcata ttttaaattg tttttctttt ggtcacttga cttttttatc tgaatccatt

20041 aattttttta acaaaatcaa tttatatttt tgtgttcatt gtggaatgaa atgtatctag

20101 ttttttcatg aaattttatt ttctttttaa gttttgttct taggtaaatt ttttagcctt

20161 ta

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

a attaaaaggt tagtaaaagt

18181 tttatacttt ttcgaacata ttaatgaaaa ctttttattt ttaagatttg aattttataa

18241 ttggcatttt gtaaaaaatt ttttatcatc acatattttt tacttggttt agtcttttat

18301 caattttgtt ttattaagta gatttttgga cctaaaaatt ttaattaaaa aatgtatgaa

18361 acgtaaaaaa tgtaaatttc tgttttgaca aaaaacattt aagaaaatta gcaataaggt

18421 gaggtattgt accgtaaaag ttcgtaaatt ttatttagga attatcctca tagaattatt

18481 tttgtaaaaa ctattgttaa gttaaattta attttatacg ctttatgaaa taaaattttc

18541 acgtaaagtg ttttggaggg aaactttaga attttaattt tttctatctt aatcaggtaa

18601 tgctagactt ataaatgtat caggtaaact tttgggtggt gtgttttgaa ttctaatttt