Allomyces macrogynus cox1.I3

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

ttgtgt tttaatcatt atataagaat ttacaaaaaa atttgtgact

61 ttacaaatca tattaaaaca aagttttaac tgagtttttt attttatctt ttaataaact

121 aatgttttgg aataaatcgt ttgtggtggt tagtaatttg caaaaaaaaa ttttcaagag

181 tagttattcc aatgatttta agcgttccaa aagctttcag gctttaattt taaaatcaaa

241 tgctgcaaaa tacttagcaa ttcgctatgt tctacaatct aatttggata aaaaaaattt

301 aactattgat ggcaaaacta ctttaagtta tttagagcgt atctcgttat tagagttttt

361 aaaaattaat tataataatc ggtttcctca aactatacaa aatgtgggtt ctttgaacaa

421 aaatggtgat tttaagttaa catttacttg tacgatatca gatcgtgtat ggcaaacttt

481 tttaaatttt tctatgcaac cggctcatga ttctactttt catcccttta attttggctt

541 tcggtttact acggaaaact tttttatcct aaaagtctta cttttaaatt taaaaaatca

601 atctcttcct ttacaaaaac gtatatacta tttttcttta gaaaatagat tggttgattt

661 tgattttctt tatttagtga aaaagttaag aatttttaga actattaaaa ttggaatctt

721 tcgtttatta aaaaaaaact actctttgca gtattgtgaa gataagtatg atacattttc

781 tacattgtta tttaatgttc ttttggatgg cttgctagat tttggtaata tttttcatta

841 tggttatcat tttttgttaa ttctcaaacc aatagagagc gagtttgttt tttttaataa

901 tatttcgtgt tttttttcta gtataggtgt ttctttttca gggaagtatt cattactttc

961 tattacaggt ttcgattttt tatactggag ctttacaaaa aaaggaaact tttatatttc

1021 agttccttcc acaaaaaact actttaattt tcttggacga gttaaatata tagttaacaa

1081 ctcgaattat ggtgtaaaaa tcaaagctgc taaattattc ccgataatca aaaattggta

1141 tgtttatcat aaatattctt ttaagaaagg ttgtagctct attatttttt ctataaaaaa

1201 gaaagtatta aaagcttttg ttaaagagtc taaacaagat atttattctg ctaagagatt

1261 attggataaa tgcttttttt ttgttgttat tcacagtctt aaaattatca agcaaaaaaa

1321 attttttctt gcaaaacact tagtttttcg cacaggttat ttaaaatttc aatgtattca

1381 ctgtggcgtg aatttaattt tctcataatg tttctaaaat taataatgtt ttcccttaat

1441 ttttctagtc aagattttat ctatggccta aaatataatt ttttcttaac aaaatctttc

1501 ctttaattaa ttttgaaaat ctcaacggat taatctttt

Genbank entry, intron is marked as red

Note: Only limited flanking sequence is available for this intron

1 taaactttta ggtgttgtgt tttaatcatt atataagaat ttacaaaaaa atttgtgact