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Information of Euglena myxocylindracea psbC.I4 intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

3' end

                    ttgtgt tttaatcatt atataagaat ttacaaaaaa atttgtgact 

  61 ttacaaatca tattaaaaca aagttttaac tgagtttttt attttatctt ttaataaact 

 121 aatgttttgg aataaatcgt ttgtggtggt tagtaatttg caaaaaaaaa ttttcaagag 

 181 tagttattcc aatgatttta agcgttccaa aagctttcag gctttaattt taaaatcaaa 

 241 tgctgcaaaa tacttagcaa ttcgctatgt tctacaatct aatttggata aaaaaaattt 

 301 aactattgat ggcaaaacta ctttaagtta tttagagcgt atctcgttat tagagttttt 

 361 aaaaattaat tataataatc ggtttcctca aactatacaa aatgtgggtt ctttgaacaa 

 421 aaatggtgat tttaagttaa catttacttg tacgatatca gatcgtgtat ggcaaacttt 

 481 tttaaatttt tctatgcaac cggctcatga ttctactttt catcccttta attttggctt 

 541 tcggtttact acggaaaact tttttatcct aaaagtctta cttttaaatt taaaaaatca 

 601 atctcttcct ttacaaaaac gtatatacta tttttcttta gaaaatagat tggttgattt 

 661 tgattttctt tatttagtga aaaagttaag aatttttaga actattaaaa ttggaatctt 

 721 tcgtttatta aaaaaaaact actctttgca gtattgtgaa gataagtatg atacattttc 

 781 tacattgtta tttaatgttc ttttggatgg cttgctagat tttggtaata tttttcatta 

 841 tggttatcat tttttgttaa ttctcaaacc aatagagagc gagtttgttt tttttaataa 

 901 tatttcgtgt tttttttcta gtataggtgt ttctttttca gggaagtatt cattactttc 

 961 tattacaggt ttcgattttt tatactggag ctttacaaaa aaaggaaact tttatatttc 

1021 agttccttcc acaaaaaact actttaattt tcttggacga gttaaatata tagttaacaa 

1081 ctcgaattat ggtgtaaaaa tcaaagctgc taaattattc ccgataatca aaaattggta 

1141 tgtttatcat aaatattctt ttaagaaagg ttgtagctct attatttttt ctataaaaaa 

1201 gaaagtatta aaagcttttg ttaaagagtc taaacaagat atttattctg ctaagagatt 

1261 attggataaa tgcttttttt ttgttgttat tcacagtctt aaaattatca agcaaaaaaa 

1321 attttttctt gcaaaacact tagtttttcg cacaggttat ttaaaatttc aatgtattca 

1381 ctgtggcgtg aatttaattt tctcataatg tttctaaaat taataatgtt ttcccttaat 

1441 ttttctagtc aagattttat ctatggccta aaatataatt ttttcttaac aaaatctttc 

1501 ctttaattaa ttttgaaaat ctcaacggat taatctttt

 

 

                                                                   

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[intron& flanking sequence]

 

Genbank entry, intron is marked as red

 

Note: Only limited flanking sequence is available for this intron

 

   1 taaactttta ggtgttgtgt tttaatcatt atataagaat ttacaaaaaa atttgtgact 

  61 ttacaaatca tattaaaaca aagttttaac tgagtttttt attttatctt ttaataaact 

 121 aatgttttgg aataaatcgt ttgtggtggt tagtaatttg caaaaaaaaa ttttcaagag 

 181 tagttattcc aatgatttta agcgttccaa aagctttcag gctttaattt taaaatcaaa 

 241 tgctgcaaaa tacttagcaa ttcgctatgt tctacaatct aatttggata aaaaaaattt 

 301 aactattgat ggcaaaacta ctttaagtta tttagagcgt atctcgttat tagagttttt 

 361 aaaaattaat tataataatc ggtttcctca aactatacaa aatgtgggtt ctttgaacaa 

 421 aaatggtgat tttaagttaa catttacttg tacgatatca gatcgtgtat ggcaaacttt 

 481 tttaaatttt tctatgcaac cggctcatga ttctactttt catcccttta attttggctt 

 541 tcggtttact acggaaaact tttttatcct aaaagtctta cttttaaatt taaaaaatca 

 601 atctcttcct ttacaaaaac gtatatacta tttttcttta gaaaatagat tggttgattt 

 661 tgattttctt tatttagtga aaaagttaag aatttttaga actattaaaa ttggaatctt 

 721 tcgtttatta aaaaaaaact actctttgca gtattgtgaa gataagtatg atacattttc 

 781 tacattgtta tttaatgttc ttttggatgg cttgctagat tttggtaata tttttcatta 

 841 tggttatcat tttttgttaa ttctcaaacc aatagagagc gagtttgttt tttttaataa 

 901 tatttcgtgt tttttttcta gtataggtgt ttctttttca gggaagtatt cattactttc 

 961 tattacaggt ttcgattttt tatactggag ctttacaaaa aaaggaaact tttatatttc 

1021 agttccttcc acaaaaaact actttaattt tcttggacga gttaaatata tagttaacaa 

1081 ctcgaattat ggtgtaaaaa tcaaagctgc taaattattc ccgataatca aaaattggta 

1141 tgtttatcat aaatattctt ttaagaaagg ttgtagctct attatttttt ctataaaaaa 

1201 gaaagtatta aaagcttttg ttaaagagtc taaacaagat atttattctg ctaagagatt 

1261 attggataaa tgcttttttt ttgttgttat tcacagtctt aaaattatca agcaaaaaaa 

1321 attttttctt gcaaaacact tagtttttcg cacaggttat ttaaaatttc aatgtattca 

1381 ctgtggcgtg aatttaattt tctcataatg tttctaaaat taataatgtt ttcccttaat 

1441 ttttctagtc aagattttat ctatggccta aaatataatt ttttcttaac aaaatctttc 

1501 ctttaattaa ttttgaaaat ctcaacggat taatcttttc tcatgtagct catgctggtt 

1561 taatagtttt ttgggctggt gcaatgaatt tattt

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[ORF sequence]

 

436 a.a.

 

FFILSFNKLMFWNKSFVVVSNLQKKIFKSSYSNDFKRSKSFALILKSNAAKYLAIRYV

LQSNLDKKNLTIDGKTTLSYLERISLLEFLKINYNNRFPQTIQNVGSLNKNGDFKLTF

TCTISDRVWQTFLNFSMQPAHDSTFHPFNFGFRFTTENFFILKVLLLNLKNQSLPLQK

RIYYFSLENRLVDFDFLYLVKKLRIFRTIKIGIFRLLKKNYSLQYCEDKYDTFSTLLF

NVLLDGLLDFGNIFHYGYHFLLILKPIESEFVFFNNISCFFSSIGVSFSGKYSLLSIT

GFDFLYWSFTKKGNFYISVPSTKNYFNFLGRVKYIVNNSNYGVKIKAAKLFPIIKNWY

VYHKYSFKKGCSSIIFSIKKKVLKAFVKESKQDIYSAKRLLDKCFFFVVIHSLKIIKE

KKFFLAKHLVFRTGYLKFQCIHCGVNLIFS

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[secondary structure]

 not available

 

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