Allomyces macrogynus cox1.I3

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

atgagt ttaacttgat ttttttgtgt gttttataat tatttattaa

61 tgatttaatg tttgattaaa attttttgtg ttttatggaa gatattttaa aaggctttat

121 acttctaata aagaatcttt atattgggaa gattctttaa aattttcgtt tttaatacaa

181 aaacgattgt ttaaaagtat ttttgtaggc gacttaaaaa ctgctttggc actccaaaaa

241 ttaataataa attccaactc ttctagactt ttagcaatca gatatgttac tcaaatatgt

301 gttaatagaa aaatggcagg agttgatgga aaaaattctc ttacttttgt agagcgtttt

361 gaacttaatg aattcttaaa gttaaatgtt tcaaattggt tttcgcaaaa ttttcgctct

421 gtttcactat taaaaaatga taatgtcgta aaaaaaataa aattgtcaac catttctgat

481 cgtgtttggc agtttttaat aacaatggct attgaaccca ttcatgaagc tttattttat

541 ccagcaagtg ttggttttag gtccggatat aatgcatttg atgtacaaaa gcttatttat

601 tttaatctaa tgtcgtctgc taatggtttg caaaaaagat gtttaatctt taatttaaaa

661 gactgtttta ttcattataa tttaaattat ttattaaaaa aaataatagc tccaagaagt

721 attaaaattt ctttaaatcg tctgtttagt ttgggttttc ctattcaatt ttccgacgaa

781 tttgaccaga agtttaatta taatttagag tctttatgtg ctaatatact tttgaatggt

841 atagaattaa ttcataattc tattcgtttc gggtattttc ttgctttttt tttaaaccct

901 ttagataatg agaaaaagat acttaatttt gtatattcag aattaaatat tcgtggtctt

961 gaatataaag atttaaaaat tacatttgtt tctagtttag atggatttga cttcttaggt

1021 tggaatttta aagttttata caataaaaat gtttatattg tacccgctct tcttgagtat

1081 caaaagtttt tacgtcgttt aaaacatatt attaataatt caaattttgg ttcaactatt

1141 aaagctaata aaatttatcc aataataaga gaatggcgac tttatcatag attttcttct

1201 ttagtaagtt cgcgtttttc tcttttttta ataaagaaac gagcattcaa aatattttct

1261 aaagagtctc gacaagattt ttattctaca aagcgacttt tagataaatg tttttatata

1321 ttatctgatt cggataaaat tttttatgat tttgaaaaat tgaaatcgcc ttattttggt

1381 catttaacgt ttcgtcttaa ttttaaaaaa aatagttttt ttaactcgaa ttctatgaag

1441 aaaaaaattt atctttgttt tcattgtggt atgaaatctt tattttatta aaccttgttg

1501 aatttttaac tatatatttt tttttattta gttaattaga aatttttatt ctttataaat

1561 aataaaaatt tacaaatctt ttataattct ttttgtttat ttttcttaat agaagtattt

1621 tctaatttat t

Genbank entry, intron is marked as red

Note: There is a limited amount of flanking sequence available for this intron

1 taagctttta ggtgatgagt ttaacttgat ttttttgtgt gttttataat tatttattaa