Allomyces macrogynus cox1.I3

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Information of Leopcinclis buetschlii psbC.I4 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgc ttatttttgt gtgattttta gaatctagta tttaatcaat

61 gagttttttt caattctaaa tttttaatag tttaattttg ggtttagtta tgtttaataa

121 taattcttcg tttatttcgt gggaaaaagc atgtctaaac gtttttcgtt tacaaagacg

181 tatttataag tctgtttgcg tgggcgactt ttcatatacg cttcgacttc aaaaacttct

241 tttggtcagt agttcggctc gtttactggc tatacgtatg gttgctgata aagtggttga

301 taaaaatctg gattattcag ataataaggt ttcacttaat tttttggaaa aattccaaat

361 taataacacc cttttccaaa atgctaacaa ttggagtcca gggaaatata aagaagttat

421 aatctcacaa acttcgttag gtaaattttc tagtttgcaa atttggtcca tcccagatcg

481 ttgttggcaa tttttggtaa ggttaataat tgatccagcc tatatagcaa tttcttttcc

541 tggcaacttt agtttgtatt tttcgcagtt ggttcataaa atgcaaaaat ccattttttt

601 gaaacttaat aaacaatctt atggcttaca aaaacgcatt ttaattattc actttttaaa

661 taaggttgaa aattttagtt gttcgttttt attaaaaaag attttagctc ctagatcaat

721 caaattaggt atttttaggt ttttaaaact tgggttaaag ttagatctta attataaaag

781 cgataagata aatcctttgg gttttttact cgtaaatgtt ctatttaatg atgttgatta

841 tatatcaaat ggtataaggg tcggagagaa tttgcttgta tttttaaaac cttcagaaaa

901 tgaatttaat ttacttaata aaatcgttga atttttttat ttagctggta ttaataaagt

961 ttaacgttaa tttgaatatc ttacaattta attaagttaa ggaactaata tctcatttat

1021 tttttgtttt attaataatt tttatttgaa gtattcatat tgtcgaaaat gagtttttta

1081 ctttatatga tacaaataaa gtgttaaatc ctcttaaaat ataactcata gaaataaagt

1141 ttgttagttt tatagcatac taaaccacat attttcgtta tgctagttaa cgatcaaaat

1201 ttttgattag ttttctgaag aacttagcac ggttgattta ttctctgttc aaaacggttt

1261 tgactttcta gattggcatt ataagttata tcctacagga gaaatttatt gtgtcccgtc

1321 ttctattagt tataatattt ttcttaggcg cgttaaaaat atcataaaca attctaatta

1381 tggtgcttta gtcttgataa ctaaccatta cttcattttt gaatgcgatt aatctaattt

1441 tgccaaagct tttatgttcc taacttttgt agcaccgctt ttttctatag aaagtatgtt

1501 tagttttcac cacgttaatt tatagtttct tgaatggatt tttcattaaa tgtttattat

1561 ttctaagctt gataaaataa aatttgtgtc gagtttttta acaagtaaaa atttacttag

1621 tttcctaagg ctaaagtggc aaagcttttc cctataattc aggaatggaa ttcttataat

1681 aagttttgcg atttaaaatc atcttatttt agtctgtttt tccttaaaaa gcgagctttt

1741 aaatctttta aaaaagaatc aaagcaggac ttatattcta gtaaaatttt gttaaataga

1801 gcatttaatt caaaactttt taaccgttca ggtatggatt ttagtcttcc atcttgtaac

1861 tattctcatc tcatattttg tagcaatttt ttaaataatc aagtaaaatt gaatttttcg

1921 atttgcattc attgtggaat gagtgctact ttatcatctt agtacttcaa agttaaaaat

1981 ggtttacttt gttttaacta taaaaattta ttttatttaa atattaatat ttaaaattaa

2041 cttttaattc gttatatctt gtttctcttt tttctttaat tgttttcaca aatttatc

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[intron& flanking sequence]

Genbank entry, intron is marked as red

Note: Limited flanking sequence is available for this intron

1 aaaactttta ggtggtgcgc ttatttttgt gtgattttta gaatctagta tttaatcaat