Allomyces macrogynus cox1.I3

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Information of Marchantia polymorpha trnK.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgc gacttggatt tttacacatt

26101 tagatgaaat aaaaaattca tccataccgt tgacaaggtt tgtaaaacta cgactaatct

26161 taaaaggaaa ctttacagaa aaaatagcat gtcgtttatt ttttttcatt catttttttt

26221 aactaaataa aatttcaatg aaaaatacaa taagtcaatt aaagttaatg gataaagcta

26281 aattgcttaa atcataggta aaagaagaac cagcttctgt ttcaaatttt tgaaatattc

26341 tcttgattta tttaaaaaat tgttaaaaga tttttaaaca gtcaatatat gagaaaaatt

26401 cctattactt tttaggtttt ttaccaaaaa tgaatcctaa acactttttt aaatgtgtct

26461 agaaataacc agcatgctga ttaatataaa tttttattaa gtcaggagaa caatcaatta

26521 aaaaaaatgt tttttttttt ttgtttaaaa gattgtacta tgtgtttatt cttttatatt

26581 ttacaaaata attaaatgaa aactatacta aaagttttgc ctacttttga aaaacaaaca

26641 aacaaaaatt tttggaataa accatatata tatatatttt tttttcagga aaatttttat

26701 ggaattgcat ataatcgttt tataaataaa accaattata aaaatttttt ttttttggtt

26761 taaaaaataa ttttaatttt ttgaaaataa aacgacttat aaaaaaaata cgtcaatttg

26821 attttttatt tattttttct aaaaaaaaaa attttgtaaa tatcaaagaa gttatagtta

26881 ttattttgga taatattttt acatttgaat caaaaaaatc ttttattaaa aacaaaataa

26941 aaagttatca atctattcat tctatatttt cttttatgga acatagaatt tataattcaa

27001 attatttttt agatattaca ataccttatt tttttcaccc tgaaattcta attagaatct

27061 ttcgtcggca tattcaagat attccatttt tacatttttt gcgaactctt ttatataaaa

27121 ataaatgttt aaatatttta aatatagaaa atttttttta tttgaaaaaa aatcagtttt

27181 tttgtttttt atggaatttt tatatttacg aatttgaata tcttttaaat gatatatggg

27241 aaaaatttta taaatttgag tcagtatttt tttggaattt tattgataaa acaaattcta

27301 taaaaaaaat aaaacatata ttaaaaaaat ctaaaaaacc gattgaaaaa aaaattgtaa

27361 aaaaaataag ttccattcat tatatccgat ataaaaataa tttgattata actttaaatg

27421 atagaaatat tttgattttg gaaaattgga aagatttttt tcttattttt tggcaaaaat

27481 attttaatgt ttggtttaaa tcttctagaa ttttaattca aaatttttat aaaaactcat

27541 tttctttttt aggttatatg tttcgtattg aaagtcaaat tattttaatt caaattcaaa

27601 taataaattt attaagaaat gttaatttaa ttaaaaaaga attttgtagt attattccag

27661 taataccttt aattagactt ttagctaaag aaaaattttg tgatgtttta ggacgtccac

27721 tttgtaaatt atcttggaca acattatcag ataatgaaat ttttgaacgg tttgatcaaa

27781 taataaaaca tatttttagt tattatagtg gatgtattaa taaaaaaggt ttatatcaat

27841 tacaatatat tttccgattt tcttgtgcta aaacattagc atgtaaacat aaaagcacaa

27901 tacgcactgt ttggaaaaaa tatggttcaa atttattaac aagttctatt ttttttaata

27961 aaacaaaatt aatttcttta aatttttcta ataaaaatcc ttacaaaaaa aatttttggt

28021 atttaaatat tattcaagta aattacttag cacattcatt acaaaaaagt aaattattaa

28081 aagaataaaa aaacatagag aaagccgtat gcagtaaaaa ttgcaagtac ggtttgggaa

28141 gagatgattt tatttttatt gaaaaaaaaa ttatttatct acttcat

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

gaag atttaagtgc ataaaaattg ttaagtctca gttttactaa

25621 ataattattt tttttatttg caagcttttt ttactttaaa caatttgaaa ttgaaagtgc

25681 ataaattttt ggattcaaaa aaattaattt tttttgaatc caaaaattta tgcactttca

25741 atttattacc aaacttaagg agattttaat gaatccattt ttttattttg tacaattgtt

25801 tttttattat ccatttttta tcattttttt atatatttat ttagtttttt ttattccaaa

25861 aacaaataat ataaattttt caaatatttt tccacttttt tcaaaatgga tcaaaaaata

25921 aagtaaattt tttaaattga atctaattaa aatagaattg acaatactaa ttcacataca

25981 tataattgtg ttgatgtttt ttattttttg atccattttg aaattcaaat tttattttag

26041 ggttgctaac tcaatggtag agtactcggc ttttaagtgc gacttggatt tttacacatt