Allomyces macrogynus cox1.I3

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Information of Nicotiana tabacum trnK.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcggcta gtctctttta cacatatgga tgaagtgagg gattcgtcca

151621 tactctcggt aaagtttgga agaccacgac tgatcctgaa agggaatgaa tggtaaaaat

151681 agcatgtcgt atcaacggaa agttctgaga atatttcatt gttcctagat gggtataaaa

151741 ccgtgttaga attcttggaa cggaacaaaa taaagttggg tcgaatgaat aaatggatag

151801 ggctgcggct tcaattaaat tatagggaaa gaaagaaaaa gcaacgagct tttgttctta

151861 atttgaatga ttcccgatct aattagacgt taaaaattta ttagtgcctg atgcgggaag

151921 ggtttcttgt cccatgagtg gattctccat ttttttaatg aatcctaact attaccattt

151981 tctattacgg agatgtgtgt gtagaagaaa cagtatattg ataaagaaag ttttttccga

152041 agtcaaaaga gcgattaggt tgaaaaaata aaggatttct aaccatctta ttatcctata

152101 acactataac atagaccaat taaacgaaac gaaaaaaaaa agagatgata gagaatccgt

152161 tgagaagttt acctgtatcc aaggtatcta ttcttactaa aatactttgt tttaactgta

152221 tcgcactatg tatcatttga taaccctcaa aatcttccgt ctttggttca aatcgaattt

152281 caaatggaag aaatccaaag atatttacag ccagatagat cgcaacaaca caacttccta

152341 tatccactta tctttcagga gtatatttat gcacttgctc atgatcatgg tttaaataga

152401 aataggtcga ttttgttgga aaatccaggt tataacaata aattaagttt cctaattgtg

152461 aaacgtttaa ttactcgaat gtatcaacag aatcattttc ttatttctac taatgattct

152521 aacaaaaatt catttttggg gtgcaacaag agtttgtatt ctcaaatgat atcagaggga

152581 tttgcgttta ttgtggaaat tccgttttct ctacgattaa tatcttcttt atcttctttc

152641 gaaggcaaaa agatttttaa atcttataat ttacgatcaa ttcattcaac atttcctttt

152701 ttagaggaca atttttcaca tctaaattat gtattagata tactaatacc ctaccctgtt

152761 catctggaaa tcttggttca aactcttcgc tattgggtaa aagatgcctc ttctttacat

152821 ttattacgat tctttctcca tgaattttgg aatttgaata gtcttattac ttcaaagaag

152881 cccggttact ccttttcaaa aaaaaatcaa agattcttct tcttcttata taattcttat

152941 gtatatgaat gcgaatccac tttcgtcttt ctacggaacc aatcttctca tttacgatca

153001 acatcttttg gagcccttct tgaacgaata tatttctatg gaaaaataga acgtcttgta

153061 gaagtctttg ctaaggattt tcaggttacc ctatggttat tcaaggatcc tttcatgcat

153121 tatgttaggt atcaaggaaa atccattctg gcttcaaaag ggacgtttct tttgatgaat

153181 aaatggaaat tttaccttgt caatttttgg caatgtcatt gttctctgtg ctttcacaca

153241 ggaaggatcc atataaacca attatccaat cattcccgtg actttatggg ctatctttca

153301 agtgtgcgac taaatccttc aatggtacgt agtcaaatgt tagaaaattc atttctaatc

153361 aataatgcaa ttaagaagtt cgataccctt gttccaatta ttcctttgat tggatcatta

153421 gctaaagcaa acttttgtac cgtattaggg catcccatta gtaaaccggt ttggtccgat

153481 ttatcagatt ctgatattat tgaccgattt gggcgtatat gcagaaatct ttttcattat

153541 tatagcggat cttccaaaaa aaagacttta tatcgaataa agtatatact tcgactttct

153601 tgtgctagaa ctttagctcg gaaacacaaa agtactgtac gcactttttt gaaaagatcg

153661 ggctcggaat tattggaaga attcttaacg tcggaagaac aagttctttc tttgaccttc

153721 ccacgagctt cttctagttt gtggggagta tatagaagtc ggatttggta tttggatatt

153781 ttttgtatca atgatctggc gaattatcaa tgattcattc ttagattttc taaatggaaa

153841 tttgtttcta aatgatgaag agataaaaaa atttcactat tctgaaatgt tgattgtaat

153901 agtaattaag gggtaaatca actgagtatt caacttttta aagtctttct aatttctata

153961 agaaaggaac tgatgtatac atagggaaag ccgtgtgcaa tgaaaaatgc aagcacggct

154021 tggggagggg tctttacttg tttatttaat ttaagattaa catttatttt atttaacaag

154081 gaacttatct actccat

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[intron& flanking sequence]

Genbank entry, intron is marked as red

aattgggtg

151081 gttttccgtt tttcattgga actctactaa aactaaaaaa gaaatcaagt ttgcttatct

151141 cacttaactt gattgaatcc attatggatt aaataaatct aaataaattg tagttttgtt

151201 ttccacttaa tttattctct catctatact tttttgtatc tattttattt ggattagatt

151261 tgtagtgcca atctaacaca agtccttttt tttaatattt tttattgttg tcaattgaaa

151321 tttctttttt ttttttcact attcaatatt tatattgaca acagtgtatc gaacaaatat

151381 aattcattgt gataaatgaa gtggatctat ttagttttat tttatgtttt aaattaattc

151441 gaaaatgtga atgtattttt ttagatttat tccttcaatg gtttttggtt gtcttgtcta

151501 atctctttat ttatttttct tcgatatttt cttcgggttg ctaactcaac ggtagagtac

151561 tcggctttta agtgcggcta gtctctttta cacatatgga tgaagtgagg gattcgtcca