Allomyces macrogynus cox1.I3

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Information of Pyrenomonas salina cpn60.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

ggtgt gcattgcttt atagccccga gttaacacca aagctatagt

1441 attggagaaa catataatat tttctgtaat agaaattatt atacttcact ataactaaat

1501 cttgatattg gtgcaaatcc aatcgctaaa ggagatagtt gacgccaatt gtgtccacat

1561 ggagattgat tatcaaaatg aagctggaga acaggaggaa tcagagatct agataacagg

1621 tcacactgcc tcttggtaag taactatggt taagttaagc tgaatccact gaaaaagcgt

1681 ctaagtttca tacgatacgt tatcaaaaag tgatcgtata ctattcaata ctcgcataaa

1741 tatcatttcg ttatatgctc tcctgagtag aatagaggcg aattgtggaa acctaaggtt

1801 acaaaaaatc aagatttgga acgaagaaaa acgtctaatg tctcttgaaa aagtagggaa

1861 acctgatcac tttccttcat ggcaaaagac gggtaggaaa tggggtaatt ccctatcggt

1921 tcatagaaat atatttgata atggagccat atcaatgaca gtcaaaacag tagcagtttt

1981 agctgatgag tggggagatt tgccatggaa aaaatttcaa aagaatctct acaagctaca

2041 acatcggata tacaaagcaa caaaaaatgg tgataatagt tcagctaaga gattacagag

2101 tttgttaata gggtcgaaaa gcgcaaagtt aatggcttta cgacaggtat tccaattaaa

2161 tagacataag aaaattcttg gtattgacgg tatgggatct tttaatttcg aacaatgctt

2221 agaattatca gaacaaatct ttcatatgaa agaatggaag catcggagac taagtaaggt

2281 ctttctattt aaagattttg gtgagaaaaa atctttgggt atttctacta taaggtatag

2341 agccatgcaa tatcttataa aatatgcttt agaccctgtt tatgaagcct tagcctcaga

2401 tagctcttac gattttcgtc cgacctactc aacttgggaa gtacaagaca aaatatttca

2461 aaatttaaaa tccagttcta aaggatataa aaaatcgata ttaaagttac acattgaaaa

2521 ctgtcaaaat aaagttgacc ataagaagct tctgtttttc atacttcttc caggtactgc

2581 aaaaaaattt ataagatctt ctttaaaata tgggatacta catgaaaatg acaaatcctt

2641 aataagaatg ccacaagaat ctatactctc agcacttctt tgcaacattg ctttacatgg

2701 aatggaaaat ctaaacaatg aatgtgcgta cagatcagaa cggcagcaaa aaggattacg

2761 ttatgccaat aacatgttat atattgtgga tgaaaaagaa aactggaaag tactccaaaa

2821 aaaaatagac agatttcagt tttctcgagg cttaagaatt tctaaagtta agacaacatt

2881 ttcatcctct caagatggag ctgattttct tggctggcat ttcaaagtaa aagctaaaaa

2941 taaaaaattc gtatgctatc catcaaaaga taatgttcta tcatttaaaa agaaatttaa

3001 aatgcttctt aaagattcta gatataaact tttggataga ataaaaatgg ccaaagtttt

3061 ttataaaagt tggtgtcagt accatcaatt ctgtgatatg ggccaagtca aagtacaaat

3121 ttggtcttta aaacgttgga catattttaa tattactcat aatagtaatt acagaaaaga

3181 tgaggccaag aagtttattg cttctatctt taatagtgac atttataaaa ttaacagagt

3241 accaattgtt agaggtagta actcaatctt tgataacgat agtattcttc ggactgctaa

3301 ttaatacatt aaaaaaagta aaattagaaa tttaaactct gtggtctaat cattgtacta

3361 atgaaaataa ttgaactata tcaaattgat gatagtttct aaaactgaga aacttcataa

3421 tattgaaata gatatatctt ttgttatcag cattacttaa tgtcctgaga aaagagattc

3481 tcatattagg ttgtaatcaa aaaagatttc taatttatca tcatttcatc ataaaaggaa

3541 tacagtcttt tgaattatgg aaagtttttg tattacacaa gagcagataa taaatcaaga

3601 ataaattcgg cgatcaatct cgtatcatta ataaaattca ttcaatgcaa tgaaaaaact

3661 acaaatgagt gagctaccta tagaattctt tttttataaa gtacgttttt ttataatgag

3721 aatcataaaa gttaagattt tatgaaaaag ttaacataga tctaaaaaaa gttaatgaat

3781 cttatatttt gattagctaa ttgttgcaag tttagaaaac taatgaactg ggagccgtat

3841 gcagggaaac ttgcacgtac ggttcatacg agaggtgtct cacgctaaag tgagcatcga

3901 ctcaac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

aacag

901 acaagaaaat cagtttagta caagagttag ttcctattca tctcgagctc atttctaaaa

961 cgtctcgtcc tttgcttatt attgcagaag atgtggaaaa agaagcatta gctactttag

1021 ttgtaaacaa gctaagggga atagttaatg ttgttgctgt aagagctccc ggatttggag

1081 atagaagaaa aacaatgctt gaagatattg ctattctaac tggtgggcag gtcatttctg

1141 aagatgctgg atttagttta gaaacagttc aattagatat gttaggtcaa gcaagaagaa

1201 taactgttgt taaagaaggt actactataa tagcagaagg gcatgagaga gaagttaaag

1261 ctagatgtga acaaatacga cgccaaattg aagcaagtga atcttcttat gaaagagaaa

1321 aattacagga aagactagct aaactagctg gaggagttgc tgtgataaaa gtaggggctg

1381 ctacggaaac agaaaggtgt gcattgcttt atagccccga gttaacacca aagctatagt