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B.the.F1 is in red (ORF in blue). It was truncated at RNA domain 6 by another intron fragment which is in green.
Similar situation found for B.t.I3 and B.t.I4. Might be 3' end truncated version.
3'end
55441 agggaattac tataatacaa ttactataat acaaaaggcc aaagaataaa taaaaaggtg
55501 gagactgcta ttctccgcct ttttgtttac ttacttttta gttctagaac taagttttat
55561 atttcaagtg atactataaa gaatcaacct ccattaaaat cagctattga ttttataaat
55621 ggattacggg atcttccaat gaaacgtatg gtggctgacg aaggtatcct tgctggaaaa
55681 ttaataataa attggacggt atgattataa aaaaataagt ttctatgttt aaaatctgaa
55741 gtgacggata acagtagata gcactaaaaa agctatacca ttttagtaaa cttcatatta
55801 tattgaagtc ataactcatt aactaaaacg atatagctta tgagacgtgt acaaagtaac
55861 acattagatg taggaattga tgtccactta aagaattggt cgacagcaat cttatcaaag
55921 cattcagtac tgaggagatt cctgcaagtt gattgcgagg gacctaccct catctcctac
55981 atagttgcga agcatttagc acatgcttct cgtggcacaa tctcacccta ccgtacaaac
56041 ggttccgcat acggcggttt cgcaatctat atgtatttgc ttataaagat gagataacat
56101 tggatacccc gctttccgaa gagactcgtc ctcaatagca ttctgaagaa aggcacgcgt
56161 acaacgccaa taccctttcc gagtatttgc ccactcctaa gccttacctt tcggtattcc
56221 acatttctgc aaatttgaaa agcgagtctt cactctcttc caacatttcc atatacacat
56281 acgcaagtgt ctgcgatacc attggtctaa tggaatcagc agactcctca tgtctgcata
56341 tttgaaatac cctatccaac ctctaaaggt ttgccagagt atctctttac gttgggcata
56401 acccatgctg ttactacgtc tggtaagaga tttaacctta cgtttgaatt tctcttttgt
56461 tgtcttgtga acacacagcc tgcatttgcc tttcgtgaaa tagaaggaaa agtccgttat
56521 gcttgagcat acgcgttcgg cggacctctt acttttgcac agtatcatgc tatcatctgc
56581 atagcgtaca aagcagtgtc cacgtctctc caattccttg tctagttcgt tcagcaggat
56641 attgctgagc aaggggctca aaggggcgcc ttgtggtgta ccctctatac ttggttcata
56701 atgcttacct atcattactc cgcttgtaag atacttgtgt ataagagaaa tgacacgccc
56761 gtcatttatt gtccttgata gtattctcag taagaaacta tggtttaccg tatcaaagaa
56821 tctaacaagg tctatgccta cagcatattt gtagccttcg cttgtataac agcacacttg
56881 gagcaatgct acatgcgcac tacgtcgggg cgaaacccaa aactgcttgg gctgaactgg
56941 cgttcgtaga taggcgatag cacttggacg atggcttgtt gtatcaagcg gtcaacaacg
57001 gttgggatgc ctataagccg tttcttcccg ttatccttgg ctatatctac cctacgcact
57061 gaattcggtt tgtaccttcc aatgcgtatc gactcgataa gttctgattt gtgttcatga
57121 agatagggaa gcagttgctt aaaatccatt ctatcaacac ctccaacccc tttgtttcgt
57181 accacttgta gataggcacg attgagattg tcgggagaaa gaatttgact cattaagtca
57241 tctttatttg gttgcactgc tatcaaactg ccgtctttca tgtccatata ggtctgcact
57301 ccctcatagc tttcggattc catcctattc ttttgagggt agccaagtgt actttctatg
57361 actcttattt tatgcattct ttcctattta gagttagtta cgtgtttata gctattgcga
57421 ttcagccctt ccttaaaaag aacttaagta ctatggcttc tgctgacttc tcacaataag
57481 ctttactccg tgtttggcaa tctaaacaca tgctccacac gtccgtgaga cctccccgat
57541 taagaatata atctttcaca cttatacctg cttgatttac accgagtgtt ccatatagct
57601 atagggcttt atcttgtttg gcagacttac ccacactcat atgccttagt atcaagtttc
57661 tgtacgtcag gtcagtgctt tgcctaagac ttcctttaga tgccgaatca ctacggacac
57721 cattgccgtc ggctgtacgc ttgccgatat aaggctgcga tggggactta cacccattag
57781 attatgccca tgtcgggcaa actccaaaag gcaactaact cgcaatgaat tagttgcctt
57841 aaattttcct attttaggaa tatccctagc taatggtaca tcgggcaaac attctcgata
57901 tttccacacc ataaaaacga gcaaagactt gatacggttc ttggtatgta tgctgtcttt
57961 tgcaatcagg tttcttagtc ttataaagag cgtatttttg tggtttcctc cccagaatat
58021 aattcctttt caaatgaacc gaaaggtaac tcgtgggcca atttgctaca attcacagca
58081 ttggtcttgc gtaacttctc cttgctcatg gtaggcacat cgactggatt accccgtaaa
58141 tgttggttat tcctaaattc atcagcctct catacatgca gaatctgcag aaaccagctt
58201 cattgattaa gaagtaattg tcacccgaat aattacttgc caagtactaa tgcaaagctt
58261 tttatttttt tatgataaat tcatccagca tttttccgtc tcgatccatt acctctatct
58321 tcatctgtgt ggtcgtggca taaatacgta gcaaagatgt attggaatta actactacgg
5'end
ORF
MHKIRVIESTLGYPQKNRMESESYEGVQTYMDMKDGSLIAVQPN
KDDLMSQILSPDNLNRAYLQVVRNKGVGGVDRMDFKQLLPYLHEHKSELIESIRIGRY
KPNSVRRVDIAKDNGKKRLIGIPTVVDRLIQQAIVQVLSPIYERQFSPSSFGFRPDVV
RMXMLQVCCYTSEGYKYAVGIDLVRFFDTVNHSFLLRILSRTINDGRVISLIHKYLTS
GVMIGKHYEPSIEGTPQGAPLSPLLSNILLNELDKELERRGHCFVRYADDSMILCKSK
RSAERVCSSITDFSFYFTKGKCRLCVHKTTKEKFKRKVKSLTRRSNSMGYAQRKEILW
QTFRGWIGYFKYADMRSLLIPLDQWYRRHLRMCIWKCWKRVKTRFSNLQKCGIPKGKA