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Information of Tr.e.F2 intron 

Note: Redundant copies found in

NZ_AAAU01000012 Trichodesmium erythraeum IMS101 (128050-132129)

 

[intron sequence]

               

5' end

                                                                 gtgcga
9481  ctcgctggcc actaaaccag gaaactgggt ataaatggcc gttctaaatc aatacatggg
9541  acaccccgat ttggaataac tcttattacc ttgatagtgt aattctatcc accttgttgt
9601  tgggttgaca gcataggcca cagggtagcg actgaacatc aatccctgaa gctggtctaa
9661  aagcgggaaa ataccagtta ccgaggaacg ataccgcaag caaaggttga caagtggacg
9721  aacaggaagg taattaaact ctcgtaaatt gaaactgttc ccaaggtagc tatgggatgt
9781  aggacgaaag tcagagggtc aatggacata attattagtt cgattatgtc aacaaccata
9841  ttaatccctc cgggagattt taccccacta aatcaatcgt aataaaggaa taagggaacg
9901  aggaaacctc tttaagacac ctaagtaaat aggtcgaaag cttaggaagc cattcaaggt
9961  taatctacac aaagttgtag gtcttaagga gagtaggatt gagtaagaag catattatgc
10021 agacgtactc actgttagac gtaatataga gtaatgatta gtcatgaata aagctgaaat
10081 actaaaaaga aaattggaca atccaaggcc cttttcaagt gtggcatggg acacgtacga
10141 tatacctaac caggtttgtg ttaatcccaa tctcaaatgg aaagacatca actggaaaaa
10201 ggtagaaaag tatgtgttta agttacaaaa gttaatctat agagcnnnnn nnnnnnnnnn
10261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncgacg gcgaatatat acttaaccaa
10321 cactcagacg ttgccataaa aaggcacgtc aaggtaaaag gcaataaatc cccttatgac
10381 ggtgattgga cttattggag tagtagaatc ggcaaacacc caggtgtaag gaaagaagtc
10441 acaacgctgt taaaacggca aaagaataaa tgcgcatttt gtggactaac ctttagatca
10501 aatgacctca tggaaataga ccatataaaa ccaaagtctg aaggcggtga taactcaatt
10561 aaaaacaagc aactgttaca ccgacattgc cacgatacta aaactgcttt agataataaa
10621 acatacacaa aacctaagtt acaggattta cctgatgaat atctatgggt aaatgatatg
10681 ttaattctaa aacagggatg tacctatgaa aaaggacgtt taggagagaa gccggatgag
10741 gtgaaagtct cacgtccggt tttgaagacg agtcgggtaa ggtaacttac ctggcttagt
10801 ttaac

 

3' end  

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[intron& flanking sequence]

 

8941  taatgggtca attccaaaac ctttacaaaa ttagatagat caggaaattt ctgattttcg
9001  ttcctaggct ccctattaat agaggtagta atagataact gataattaat aactgaaatg
9061  ataaatcctc ctattaattt gataccctaa ctaaaatggt attgaaaata agtaaaaata
9121  gtggatatat cgattggacg cggaaaaaca gctcgtagag cttacggaat tgatgaaatc
9181  gccctagttc ctgggcaaag gacacttgat ataaatttag tagatactag atggagtatt
9241  ggtggcattg aaagagaaat accaataatt gctagtgcaa tggatggagt agttgatgta
9301  aaaatggccg ttcttttatc agaactagga gcaatgggag ttctcaattt ggagggtatt
9361  caaactcgct atcctgatcc agtgccgata ttagaaaaaa ttagctctgt tgggaaagag
9421  gaatttgtga gtctaatgca ggaactgtat gctgctccta ttcaatcaga attagtgcga
9481  ctcgctggcc actaaaccag gaaactgggt ataaatggcc gttctaaatc aatacatggg
9541  acaccccgat ttggaataac tcttattacc ttgatagtgt aattctatcc accttgttgt
9601  tgggttgaca gcataggcca cagggtagcg actgaacatc aatccctgaa gctggtctaa
9661  aagcgggaaa ataccagtta ccgaggaacg ataccgcaag caaaggttga caagtggacg
9721  aacaggaagg taattaaact ctcgtaaatt gaaactgttc ccaaggtagc tatgggatgt
9781  aggacgaaag tcagagggtc aatggacata attattagtt cgattatgtc aacaaccata
9841  ttaatccctc cgggagattt taccccacta aatcaatcgt aataaaggaa taagggaacg
9901  aggaaacctc tttaagacac ctaagtaaat aggtcgaaag cttaggaagc cattcaaggt
9961  taatctacac aaagttgtag gtcttaagga gagtaggatt gagtaagaag catattatgc
10021 agacgtactc actgttagac gtaatataga gtaatgatta gtcatgaata aagctgaaat
10081 actaaaaaga aaattggaca atccaaggcc cttttcaagt gtggcatggg acacgtacga
10141 tatacctaac caggtttgtg ttaatcccaa tctcaaatgg aaagacatca actggaaaaa
10201 ggtagaaaag tatgtgttta agttacaaaa gttaatctat agagcnnnnn nnnnnnnnnn
10261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncgacg gcgaatatat acttaaccaa
10321 cactcagacg ttgccataaa aaggcacgtc aaggtaaaag gcaataaatc cccttatgac
10381 ggtgattgga cttattggag tagtagaatc ggcaaacacc caggtgtaag gaaagaagtc
10441 acaacgctgt taaaacggca aaagaataaa tgcgcatttt gtggactaac ctttagatca
10501 aatgacctca tggaaataga ccatataaaa ccaaagtctg aaggcggtga taactcaatt
10561 aaaaacaagc aactgttaca ccgacattgc cacgatacta aaactgcttt agataataaa
10621 acatacacaa aacctaagtt acaggattta cctgatgaat atctatgggt aaatgatatg
10681 ttaattctaa aacagggatg tacctatgaa aaaggacgtt taggagagaa gccggatgag
10741 gtgaaagtct cacgtccggt tttgaagacg agtcgggtaa ggtaacttac ctggcttagt
10801 ttaac
atttc tcaaagaatt aaagaaatca aaaaacaagg tggtatcgta gcagtaagtt
10861 tcacacctgc gggagcacta aaatattgga aagtaattgc cgaagctgct gtagacttac
10921 tttttgttca agcaaccgtt gtttcaactg cgtttgtgtc agatgaatca gtagaaaagc
10981 ttgatttagt taagctttgt caagaaatgc ctatgcctgt tgttttaggc aactgtgtta
11041 cttatgaagt ggcattaagt ttaatgaaag caggagcagc aggagtatta gtaggtattg
11101 gccctggtgc agcttgtaca tctcgcggtg ttttaggggt tggtgttccc caagtgactg
11161 caatagcaga ctgtgcagca gcacgaaatg attactatca agtaactgga aattatgtcc
11221 cagttattgc cgatgggggt ttaattactg ggggtgatat ttgtaaatct attgcttgtg
11281 gtgctgatgg agttatgatc ggttcaccta tagctagggc ggccgaggct ccaggagctg

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[ORF sequence]

 

              

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[secondary structure]

 

 

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