Glycine max nad1.I4

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgg ggctttgcat ctgacattcg ttgggcttcc

241 ctcttcggga gcctgcgtcc cggcgttttt gtgcaataaa cccctccggc cgaagactag

301 tggtaggtgg tcccgcggag ctttcggaga agggtagcct agtgtgtaag cacagcaatg

361 aaccgcggcg aaccctcaga cgacctatct aagattaggg gggagatcct cagtagtggt

421 gaccctttca ctcttccacg gactgataca tgtaccgaat gctcatacgg gaaagttgac

481 tcctgggtct ggaacgaagt ctccgaaaaa tcctttcttt ctcgtccact caggggggtg

541 cggacacacc tgcgcggatt acaggtgacg gttacaagaa tggcggggaa gtgaacagta

601 cccgacgaca ttcagggatg gatgtagacc catcgggcag ggataatcat tccggtcctg

661 ggagaggtgg cgaccattct caagaactga gctgagggaa gccttatgag tcactgaaac

721 gacggcaggg gggccttgat ctatcaatca atagagggag caaaaaacgg gctttgctcc

781 cctttacaat atgaagaaag aaagaagggt cgaagtttag accgcttaca gtagttctac

841 ctatagaaaa gatcatgaaa gaggcgatca gaatggtact cgaatccatt tatgatcccg

901 agtttccaga cacatcgcac ttccgctcgg gtcgaggccg ctactcggcc ctaagacgga

961 tcaaagaaga gtggggaacc tctcgctggt ttttggaatt cgacatcagg aagtgttttc

1021 acaccatcga ccgacatcga ctcatcccaa tctttaagga agagatcgac gatcccaagt

1081 tcttttactc cattcataaa gtcttttccg ccggacgact cgtaggaggt gagaagggcc

1141 cttactccgt cccacacagt gtactactat cggccctacc aggcaacatc tacctacaca

1201 agctcgatca ggagatagga aggatccgac aaaagtacga aattcctaga ataagatcgg

1261 ttctattaag gacaggtcgt attgatgacc aagaaaactc tggagaagaa gcaagcttca

1321 acgctcccca agacaacaga gccatcattg tgggcagggt caagagcatt caacgcaaag

1381 cggcctttca ttcccttgtt tcgtcgtggc acaccccccc cacaagcacc ccccggcgaa

1441 ggggggacca gaaaacgcct ttcgttttcc ccccttcgtc ggcccttgcc gccttcctta

1501 acaagccctc gagcctcctt tgcgccgcct tcttaataga agccgccggg ttgaccccga

1561 aggccgaatt ctatggtaga gaatgctttt attataataa ttgggccatg agagacctta

1621 ttaagtattg caaaagaaag ggcctgctga tagagctggg cggggaggcg agactagtta

1681 tcaggtcaga gagaggcctg gcccgtaaac tggccccctt caaaaaaaac cattatttca

1741 taaggatttg ttacgtgcga tatgccgacg acttactact gggaatcgtg ggtgccgtag

1801 agcttctcat agaaatacaa aaacgtatcg cccacttcct acaatccggc ctgaaccttt

1861 gggtaggctc tgcaggatca acaacaatag ctgcacggag tacggtagaa ttccccggta

1921 cggtcattcg ggaagtccct ccgaggacga ctcccataca attcttgcga gagctggaga

1981 agcgtctacg ggtaaagcac cgtatccata taactgtttg ccacctacgc tccgccatcc

2041 attccaagtt taggaaccta gggaatagtc tcccgatcaa acagctgacg aaggggatga

2101 gcgaaacagg gagtctactg gacggggttc cactagcgga gactcttgga acagctggag

2161 taagaagtcc ccaagtaagc gtattatggg ggaccgtcca gcacatctgg caaggatcaa

2221 gggggatctc gttgttgcat agctcaggtc ggagcaacgc gccatcggac gttcaagagg

2281 cagtcgcacg atcgggcatg agtgtccgga agttgtcatt gtatactccc gcgggtcgga

2341 aggcggcggg ggaaggagga ggacactggg cgggatctat cagcagcgaa ttccccatac

2401 agatagaggc gcctatcaaa aagatactcc gaaggcttcg ggatcgaggt atcattagcc

2461 gaagaagacc ctggccaatc cacgtggcct gcttgacgaa cgtcagcgac ggagacatcg

2521 taaattggtc tgcgggcatc gcgataagtc ctctgtccta ctacaggtgc cgcgacaacc

2581 tttaccaagt ccgaacgatt gtcgaccacc agatccgctg gtctgcaata ttcaccctag

2641 cccacaagca caaatcctcg gcgcggcata taatccccaa gtactccaaa gactcaaata

2701 tagtcaatca agaaggtggt aagacccttg cagagttccc caacagcata gagcttggga

2761 agctcggacc cggtcaagat ccgaacaaca aggagcactc cactactagt ctagtcgttt

2821 tttttctatt agttgcgatg cgaacaggcg tttacttatg agattcgttg agtaggcttg

2881 cgtgagttgt ctgctataag atagctagtt ttggggcttt cgacattaat aaaaaagcct

2941 atccggcttg gcttcgctat cgctcatgac ttgtattgta gtcggcccgg aatgcctttg

3001 tagtcttttt aatgctaatg ccttcttcct tcattcattt tcttttagtt gcggcagctt

3061 ccgcgccagc aagatacgga cggcgaagcc aaagcaatac taaacaagcg agaaaagccc

3121 tatctattct attagtcaag cctaaactta ttgaaaacga aagcgctaac gagcaagaaa

3181 acgggaaggt tggttcgagg acccgttggt caaaggaaag gaaaggggag gtccttattc

3241 cgggacggag ccgtatgacg cgagagtctc acgtacggtt cctttgagaa gggtgtgata

3301 ccaccaccta tcaggcccga cgagcggtcc acggagctgc atccctactc acctggtcca

3361 tgcacatcgc tctctccagg aggttggccg cctatcctag atcttcccat tttcaagagg

3421 atcccgggct cgatctggtt tagtatcaag gtga

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

1 tttgatgtcg attcatccat acttccattc tttgtagagg gaggctaact gcttgccggc

61 tgggagctgt atgaacggta acgtccacgt acggctccgt gagaagggcg gtggacagaa

121 atggccttgt tgtacctcac tctcgtcttc aatggggtct gctctttttt ttttgggaga

181 gtatgccaat atgatcttaa tgaggtgcgg ggctttgcat ctgacattcg ttgggcttcc