Marchantia polymorpha SSU.I1

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Information of Marchantia polymorpha SSU.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

Note: This intron sequence occurs on the reverse complement of the original

GenBank sequence. Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

gt gcgccatttc

29761 acgatatatt aggcccgcgc ccccagatca aaatgatcag gcaacaggcg ccgtgcgagt

29821 tgcaaatcac gcacgtaatg ctagcagctc atccgacgct ataaccaaaa gcaatccggc

29881 gaaagcctag gggagtatag catgctgcta aacggagaca cggatacaag cacatatatc

29941 gaggccgtct tcggagcaac cagtcgttca taggttctat ctctgagtct actgcgggtc

30001 tgccttcccg aagcagtcaa actgcttaag agtagggggt ctcctcagag tttcggggga

30061 tcccataaag caaccgctca tcagaaacac caaaggtgtg caatgactcg aacctaaaaa

30121 cgacactgac ctaaatatcg gaacttgggg tccctggtat tcgccgccgg ggacggatgc

30181 ctgatagtag cttaacgcgc taagcaggca agtatcacta ctccatcaag aacattctgt

30241 accctcccgg agcatcgtgt ctcttatgat agaaatcaag cctccggaga taggaggagt

30301 ttataagttc caaaaagaaa aaaagaagag ttatcatgac aaaatgcaat tacgagcaac

30361 tactagaccc cgagatattt aggctagctt acgagctaaa gaaatcgaaa tcaggcaata

30421 tgaaacctgg tgcggataaa gaaactctcg acggtttctc ccaagcctat gttgagaagg

30481 tcgtccgtca actaaaagac gaatcatttc aattccgtcc gtcacgaaga gaattcattc

30541 ctaaagcaga cggcaagctt cgttccctgg gcataccatc acctagagac aagatagtac

30601 aagaggtcat gaggaggatc cttgaacctg tatttgaacc gcgattcctg gattcgtctc

30661 acggatttag acctcatcga tcaccgcaca cggctctacg acaaatccgt cgatggacag

30721 gcacctcctg gatgatcgaa ggagacatca aaggatactt cgacaacatc gatcatcacc

30781 tactcgcggg attcatagca gagttggtaa aggaccaacg gcttctcgcg ctttattgga

30841 aattggtacg cgctggctat gtaaatcaag gcaaagcaga gccacacttg ctaacaggag

30901 tacctcaagg aaggatacta tcgcctctgc tttccaacat ctacctacac cagttcgatc

30961 tattcatgga ggaaatcaaa gtcaaatata caacgaccgg tgcgctttcc aaaaacaacc

31021 cgatttactt gaaggcgcgg aataaatact acaaacttgt gaaatcatta aaggcttctt

31081 ccgccgaaat catccgagcg agacgcgata tgttgaaaat gacttacggg attcaaacag

31141 gttctagggt gcgttatgtt agatacgcgg acgattgggt gatcggggtc acgggtccaa

31201 aagccctggc cgtacaaatc aaagaagagg tctctacctt cctccaagaa aaactaaaac

31261 tttcgcttca ggccgaaaaa acacgtatta ccaatctatc aagaagcgaa gctttattcc

31321 taggaacctt aataagcata acaactcgta aatacgtgca aagccagaag gtgggcgggg

31381 ggcacaggcg agcctccctc ggtagaatac gcctgtgcat ccccatcgat atccttatcg

31441 ggaagctctc acaaatgggg gcgtgcgacg aaaagggaac gcccaaagcg gtgaccaaat

31501 ggatctttct aaacgtggga gaaataatca acaaatatat ggctgtgttc cggggatact

31561 acaactacta ctcattcgca gacgatatcc atcaccttct ccaaataata tacatactaa

31621 gatactcggc tatcaacacg gtcgcccgta aactggggct taacacagcc aaagtaataa

31681 aacgcttcgg cgtggaccta atcttccggg accacacgaa tgagatcaag cataagctca

31741 atttcccgcg atccctacct aataagcgca tgaacttcgc cttgagtccg ccttcggacc

31801 ctagagttct atttgataca agctgcgctc gcattcagtg ttgaacgacc tgtgtcaagt

31861 atgcggctcc tacgaacagg tggagatgca ccacataaaa agactaagcc gcgataacgc

31921 ggtttcacta ggttgatggt ctaattgaat cgtaaacaac tcccggtctg ccgtaactgt

31981 cataggaaga ttcatagagg ggaatacaac ggaatgaggc tggaacgatt actcgcaagg

32041 aacaaaagac atcttgatta gttagtgaca gggagagcca tatgccggga aactggcacg

32101 tatggttcgg agggaggtat atgtcttcca catgggagat gggtaccgac cctac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

g ccgcggtaag acgggggggg caagtgttat

29281 tcggaatgac taggcgtaaa gggcacgtag gcggtgaatc cagttgaaag tgaaagtcgc

29341 cagctcaact ggcggaatgc tttcaaaacc aatttactag agtaaggcat agaggaaagc

29401 ggaatttcgt gtgtagcgat aaaatgcaaa aatatacgaa ggaacgccaa aagcgaaggc

29461 agctttctgg ttctttaact gacgctaaag tgcgaaagca tggggagcaa acaggattag

29521 ataccctggt agtccatgct gtaaacgatg agtgttcgtt cttggtctac tgatatcgca

29581 ctcttttggg ctgacttaag ctcggcttaa tgcttaaatt actgcaaagg tagtgtgact

29641 cgattgtttt cttcaagttc caacaatcgt gaaaaatatg tgatgatcag gggctgagct

29701 aacgcgttaa acactccgcc tggggagtac ggtcgcaagg ctgaaactgt gcgccatttc