Marchantia polymorpha atp9.I1

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Information of Marchantia polymorpha atp9.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

Note: This intron sequence occurs on the reverse complement of the original

GenBank sequence. Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

gtgcgc

16141 ctcggcagag cgcgtttgga tcagcgaagg ttaacagatt atcgcacggc cttagcccta

16201 acctgtagcg ggaacagacc gcagggaacc atagcatggg tttcggctga gtttcgtcgc

16261 acggtgttca cgagtgcttc agagtcaagc gttactccct ccaacgaagg aggcccggaa

16321 ggcactaagg accaactaaa ccctttgtgc aaacaaccct acgggggaaa ctgcaggaag

16381 caggaaaagt tgctcactaa cctaaacgac gagcaaacaa ccaaacgtga aaacgaggga

16441 tcaccccaat ggaccccaaa aaggttagtg cctaggtgcc aaaccccggg ggaccgaggt

16501 atatccaaaa atgtaatggg tgacagatca gtcataagta ctccgaggga tacactgggc

16561 aaaccaagtc gcgtatacga cgatgcccgt aatgtgaaag actctgaggg aaggactgta

16621 gatggtaatg tgccggcgga aaaagctttt ttttgtcaaa aggagagggt cgaccaacag

16681 gacagggcag aaaatggaag actgagaaaa gcagaaatat ttttttttgg gagtatagca

16741 aaatcagcga aagcaactac taaaaccaag gccaataaag gtgagtctag accggtgacg

16801 cctcccgcgc tcggtcgcgt cttctatgaa gacatttaca atatagacaa ccttagggct

16861 ggctacaaaa ggctaaaagg aaatgtagcc ccgggaatcg acggtagaac taaagcggac

16921 atgaccgaca aggcccttga aaaactatcc aaagagttga gaaggcaggc atatgcccca

16981 aaaccggcca aacggataat tattactaaa ccagatggcg gtagtaggcc cctttctatt

17041 gcttcgacgg ttgacaaagt tgtgcaatcc actttaaaag aactggtgga accgcacttt

17101 gagtcgcttt ttagagactc aagccacggg ttccgccctg ggagaagctg tcataaagcc

17161 ctccgagacc tccgttactc gtggacggca ctgacttggc ttgtacaaat tgatattaag

17221 aaagactttg acaagattca tcatgacctg cttattaagg aaatggaatc agtactgcga

17281 tctaaagcac tacaggatct tatgcgaaag ctacttaacg caggatacat agatgtatat

17341 aatcttacag atcgaacgca atacaacaca gagggcgtta cgcagggctc tataatctcc

17401 ccgctttgtg ccaatatctt cctacataag ttggattgtt atgtcgaaga catactcata

17461 cccaactaca atgtagggaa tatgcgcccc gcgtcggcgg aatataagaa aaggcttaat

17521 atccattcaa aggacaaagc cttcttcaag tattatacag aattagagca ggccatcaaa

17581 aacatcaaac acctaaagtg gataaatcgc gaacaacaaa aaaaatctat tttagtaaaa

17641 aaaaaatatt tttttgaaaa tttgtttttt tttcgaaacc ctaaagtttc gtgccctttg

17701 ggccgaagga cgcttctaga aatggctgag aaagaaggat taaaaagact taagtacctc

17761 cggtacgcgg ataacataat tttaggtgtt ataggcagca aacaagatgc cctagatatt

17821 agaaaagccg tgcaaaactt cctgcaggaa gaactgaagt tggacataaa cgaacagaaa

17881 agtaaaattt tacacgcaaa gtccgagatg gccaaatact taggcgcatt agtaatatat

17941 tacggcaccg gaagtgtgga aatcttaagc aaggtctccg atgtcaaaca aataagactc

18001 cgatctcgtc cacaactaat agctcccata aaggacttaa taactaaagc cttggaactt

18061 ggatacgcga aaaaaaaacg ccaagggctt agctcgagca acctccaatc cacgattggt

18121 ttcctcaggg gacaaacaca ttgttatcca cttctcatcg gtgatacgcg gcattgttaa

18181 ctactattca tttgtgaaca agcgctcttc cctgtggaaa gttgtgtcca tctataaaaa

18241 gtcctgcgcg ctaaccttgg ccagaaaaca cggcctacgg tcagccaaag ctgctttact

18301 caagtttggt ccaaacctgc gaatcacaga aaaaggcaag gaggtagcgt cactatacta

18361 ccccacctct ctaaaaacta caggaaagtt ccacgctact aggttcagtc aggttactat

18421 actcgaggaa ccatattatg gagtcaggtg actatattcg aggaaccctg tgatggagtg

18481 gcgtggatag agcggacaga ctactcacaa caaaaggctc tatcccgcgc ctccgacaaa

18541 aaaaatatgt ttaggctctc ttcctttggt cgagtgtctc gctttggtcg agtgtctctc

18601 tttggtcttc gcgcctctcc cctcttctcc ctttagcact cgcgcgtgga aatcgtaaag

18661 ccatttccaa cctgcggacc cttctttatc agccatttag actagttcaa aatttttttt

18721 gcagctttaa ctgtatcact tgagacctta tatcccggtc tcggcgctct tgctagggca

18781 accatagcca aatcaagaaa gcggatcacg ctatgcctac aatgacttag ttacaaggtg

18841 cagggagggg gaattgcaca gtagtcgcgc gtcccggtgt aaggagggct agtagcgctt

18901 atacggccaa gccacaaaag ctgaagaaat tgccatggac gagccacatg cagggaaact

18961 tgcacgtgtg gttctgaccg gggggaataa ccctatcggt at

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

aaagtc cgtatgacaa ccgagtgcat

15661 cagcctttct atttctgttt ctatttctaa attgaaggat atgctagcca gtaaggtccg

15721 tttattacga gccttggtgc taagctacaa atgaagcgcg taaagtctac caaatactat

15781 ttcgtagaaa ataattcatt atatccaccc atgcttttcc taatctacag aaatcttgag

15841 tatttcgtgc ctcaggcatg gcccgggggc caaaggttct cgtttatata tggtattata

15901 catattatgt ctcttctgtt aacccccccc tttgggccat aagggttcgg gttgatttta

15961 gtatattggg ttgtttttag tttggctgca tttttattga tcagccatga atggtcattg

16021 ttttgacaaa aacaaaagta aacggttatg ctagaaggtg caaaattaat tggagcagga

16081 gcagctacca ttgctttagc gggagctgct gtaggtattg gaaacgtttt tagtgtgcgc