Marchantia polymorpha atpA.I2

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Information of Marchantia polymorpha atpA.I2 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgc gacgtgacgt gtgtgggatc

117961 ggtgagttgg gggcgcatcg tcgtcccctg cgacagagcc aaggattaag gggtagttgg

118021 acttttccta ccccaagtag caacaccgta ggcgatctta acagagcttc ttcgggggag

118081 tcctccgaga ttcgagtgga agccccctac cacggtttgt ctgttagcac taggccgtat

118141 ccttttgata ctgttagtcc tagccccgat acaaaagccc aggtccatgg gcggttttcg

118201 ggaatcggtg ggcggttgcc cacagggatt agaagcttgg cgttaagaaa tgtcgatcct

118261 cgtacgagcg cggcgagctc cttcggcgga tccctccaaa gacacaacta cagttcgctg

118321 tcaaaagact tgagggccgc cgcgggcgcg gagatggagg tggaaaaccc cgaattagcc

118381 ggtggatgcg cggaaaagca gaacccggtc aacgcgggac ctaatacctt ctgcatagaa

118441 gatgtgcagg ctaaagcgag cgtgagctcg tcctttcatt tggagtctac ggactccata

118501 gcaaaagttc tagcctcgaa aaggagtgat aaaggcaaat accaagatct ttttagcctt

118561 ataataagcc cagagaattt aaaacaggcg tggctagaga taagaaacaa aacaggcaat

118621 ctgacgcccg gtggcacggg cgaaaccggg gaagactggt ttacggagac cagcataagt

118681 tttaataagg gaatctataa ataccaacta gccagaaaag ttggcatacc gggcgagcgc

118741 cgcccactta ctataacatc tccccgggac aaaataattc aacaggcctt caaaagaatt

118801 ttagagccta tcttcgaagg ttatgttgtc ggggttacag tccctcggaa ccagggcaac

118861 gacatggtta aacactggat cctcccagtt gtctttagca acttatccca cggattcaga

118921 cccggaaaaa atgcccattc ggcgctccaa caaatgcaat ttggttggag ggacgtacat

118981 tggcttctcg actacgacgt gaggaaagct tttgataacg ttaaccacca cgtactgtgt

119041 gctgcgctgg aagagcagat agcggacctt agggttatcg acgagattcg caagatgctt

119101 aatgtgaaag ggttaaactt tgacatccag gaaaccctgg gaaccccaca ggggtccgtt

119161 ctatcccctt tcctctttaa cgtttacatg cataaatttg accaattcat gcataatctt

119221 atagcacact acgaccgttt gggcaagagg ttaataaatc ccgaatggaa agaagttagc

119281 cgagtcagag ctgatgagaa gggtcagctg tcggaccagg ctactaggaa ccggcagaga

119341 cgtttagccg ctgcccgcaa aggtatcaag cgatacatct accatccggc caatatcaag

119401 atccgatacg ttcgttatgc tgacgatttt ttggtaggta tcgagggccc gaaggacctg

119461 agtaagacca ttagagggga aatcaacgat ttccttcaat ctgccctgca cctagagata

119521 aagaaggaca acttggtcca cgcgcgttcc gattgggttc gttttatagg cttcgacatt

119581 caagctagaa tgacaggttc ctgctttacc aagggtaagg agcttgaggc tattaacaga

119641 tttaaacaaa gagcccgtag ggccaaagag aagtcacaca agaagtacca atctatgatg

119701 aacaaggtgg gagcttcgat ccaacgccga accatagagg atacctttgc tagggctgag

119761 caaacctacc ttaagcaagt acaggtcgca gtgggagccg aaacccttag tcgatcgcaa

119821 gctttggacg ctctgcaaga atcactcaat gtactaagac atgagtactc atgggaacag

119881 ggtaacggac cagcccagat gcctgagaat tatcggaaca ccgattcggc aagcataagg

119941 gaagtggctg ggcagtggat tcgagaggct aaatcccttg gaaacctcag ggtcgaacaa

120001 gaagttagac aagccctgaa agatctatac ggggtagaca ttgtggagaa ggtggaggaa

120061 ctcagtaagt tcctggacaa cttagactct ggtcgaggta aaataacacg gtacatcaaa

120121 gataagtata aaggtaagag tgcagctata gcctcggtca acctttatat aagatgccca

120181 atatctcaca tactggaatg tctgcggtcc caaaatattg tagccaagaa tacccgaaga

120241 cctattgcgg tcactactat ttccaatctg gatgatctaa ctattatcga ctggtttaaa

120301 tccaaagccc atgggatcct aagctattac aaatgcgcac acaacatctg ggaagtccga

120361 gatctggtca actaccattt aagatattct ctccttagca ccttagccct caagcataag

120421 tcctcaattt ccgggattat aagagggtac ggtaaagccc cgaaaatacg aacaattaat

120481 gagaagagcc aggaatccac ggagttcccc acagtacaca gagtgaatag cacccgcaga

120541 ggatttaaca ccaaaccaat aagcctaata acgttacagg attttcagga tctcctgatg

120601 agaccgtgcg tggcgcggaa acagtactat gacccgcttc atgcagctaa acgccaaaat

120661 cggtagtatc acccgataaa actactgcag aactgggaga ctagccgcca ctggtctacc

120721 tagatgcctt tgatcattcc tctagtctcc tatgggagcc ggatgaggga gaaatttctc

120781 acgtccggat ctttgagagc ctccgggcta ctctct

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

agct ccatcacatt cggaagctgg taaaaaggtt caaaggcaac

117481 atcgtcacca tcaacgttaa gggcaaacgc accggaaaac aggatctgga caaggtgcgt

117541 ctttcagccc tatccagaaa acaaatcccc ctctgcccca aacatcactc cgactttcat

117601 gaaggcacca taacattgga aaacatagac agcaagtatt cgtatcctaa gaccttatat

117661 gtgggcggag aacaagggaa gttggtgaac atagaagacg tcaccaaaca acgttttctg

117721 gaaaaaaaaa aacactagtt ttttttaccc ccccttttat ccccgtcagg ggataattgc

117781 agggcctcgt tttcaccccc ggaatgttcc agtaggagcc gtatgatggg aaaccatcac

117841 gtacggttcg gtgacggcct gcgggctagt tctacaacac aagctggaga cgtatccgct

117901 tatattccta ccaatgtgat ttccattaca gatggagtgc gacgtgacgt gtgtgggatc