Marchantia polymorpha cob1.I3

[Back to mitochondrial introns by organism] [Back to home page]

Information of Marchantia polymorpha cob1.I3 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gcgcggt tcggacccaa caatatccgc taccgacgga

104941 aatcggtgcc ttgagggcgt taaggctaat ccctaccgaa actggggagt gagtgacctc

105001 ctccccaggg caagctcttt ggatgggaaa atgctctttg tggttcctga tacaagccca

105061 agccgccttc ttactataag gggctgccgc cttcgcctag gcgggccggc ggtcacgtcg

105121 ttttgccgga ctcacgcgag tactcctaat tccgggggag gaaaggggcc ctctgaggaa

105181 ggaccaaaca agacggcgtc gccaagttcg cagactggta aatgcttagg gaggaccaca

105241 ctgagtgctt cggattggtt gggaccgaaa caaaattggc cggggggaac cccggaactg

105301 ataagcgaag cctcgaataa agccttaggc cttgatgagg tacgggccca agatgaggcg

105361 aacccgatct atggacagat gagtggagcg attaagagtt cgaatcttga cgttcctctt

105421 aaccccttgg agttttcaca tctggcccaa cttgtagaga aacaattcat cgatggcaaa

105481 tatcgccatc tggtaaggga gattatatct aaaccggaag tgctgcttac ggcctataac

105541 aacatcaaat ccaaacccgg gaatattccc ggaagtccag agagcgacac gctcttcctt

105601 cgtcgagtgg cttcgcccgg cataagcctc aaatggtttc atgaaacggg gcggaaactg

105661 agggagggta catacgagtt tgagccgatt tggaggtccg aaggaccaaa gacgggtaaa

105721 gctgaaaagc gccccctaac catagcgaac cctagggaca agataataca ggaggctttc

105781 cggatggtac tggaaattat ctacgaacca aggttcaaag atatatccca tggtttccga

105841 aggaacaagg gtactcactc agccctgagg gacatcaaaa tgcggtggaa gaacccatcg

105901 tggtggctcg aattcgatat tcggaaatgc ttcgacacta tcaacaagaa aatactaatg

105961 tcaatactaa gcgaaaccat tcaagataat agactcgaaa gtaccttgaa ccaaatgtgg

106021 aacgcaaaga ttatggatgt cgaattggga ggccccgggg ttcctcaggg aagccttata

106081 tctcccatcc tgaccaattt atacctcgac agactcgaca gggagatctt aaggatccga

106141 aaggaactcg aaaaaggctc tccgaggcat cgtcgagcca atcccgtata tgagcaactg

106201 ctgtacatcc cgaaaaactc ggtgatgcag atgggaccgg cagccctgct tcgaaagaag

106261 aggacacggc ttaaaattgt cagaagtata ccctttgcgg atcccaagga ccctaaattc

106321 gtgcgaatct acgcgtgccg ttacgccgac gacattctga tggcagtttc ggggtcgaaa

106381 gctttggccc gcgaagtcat ggaacgagtc tcccggttcc tcaaagacgt tctccacctg

106441 gagataaacc cagagcaaac ccgtctggga cacgtagtgg aagagaaggc aaccttctta

106501 gggatgaggc tcttaggtcc gaaaccaagt caattgcacg tgaggtcgga caaagcgact

106561 cgggccagga ataaatatcg gggccgcgtc cgaaaggccg cgttggagct ttcgaatggg

106621 tgggagaaag ggcttaagaa gctcggagag aagttactgg tgtgcgccct gaagagggcc

106681 ttgaaggagg ccggcaaaac ggggaacctt acacttatga aacctgacca agaagtgcgg

106741 aaaatgctag aacaaatttg tcgagaagtt gtgagtgagg tacaaaggcc aacggggatt

106801 ggtcaggatg ccatgttccg gtgggcacgt gaatcgagta aaggggacat cttcacgaat

106861 attattgaac gggatggaca gggagtggtg agaaaattcg acgaattcgt cgtatcggtg

106921 cacaagctct tatacccaga gtccaaggct gagcgaaaag aatcaacggg tccaggcccg

106981 gaaagggacg cccccacgaa ccaacgccag gcgttccgaa tacagatata cgcaccgctt

107041 tcgcggatac tagacaagtt aagggccaga ggaatcatta acgctgaggg aagaccaacc

107101 tccgtccccc tcctcgcgac ccaagacgat gtcactatca cgcaatggta cggaagtgtg

107161 gcgcacgggt tcttaagtta ttaccgatgt tgtgataact tctataaggt caaaaaggtg

107221 gtagactatc agctcagatg gtcctgccta cacaccttat cacacaagat taaagccaag

107281 ggcgtgggta aagtcataga caaatatacc cacgagctgc gggtggaaac ggcgaagggc

107341 cctagggtat atttccctac acctactgaa ctgagggtta tgggaaaaca attcttggtg

107401 aagagcatca aagacccgga gagaatcctt ggtctgatgt tcttacgcac cactaggcac

107461 ccggccgata gatgctcagt tataggttgc ctggagagta agatcgaaat gcaccatatc

107521 cgtgcgttga aacgcagcgg agcgggcggc cccaaaatgt ccatagtaaa ctctagcagc

107581 gaccgaatca gtgggctaga agctcttcac gcggcgctta accggaaaca aatttcctta

107641 tgcagggagc accacaaggc gatgcatgcg ggggatataa gtctgcagga tatagatgta

107701 tctgtggttc tgaacccgaa cccaagaagg gggcaggcct gtgattctcg atgattaaac

107761 tctacaacga aaaagattgg ggttgggagc cgtatgagcg gtaacgttca cgtacggttc

107821 tgtgagaagg gttggggacg gaaatggccc cattccctta ctctcg

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

acaggag tctaaacgac atcttaagca cagggcgttc aaaaacgaag gtttttggac

104461 gagccgtgta ggaaacaacg gtgaggtcct aggggtcgct tttatcccta ggaagtcaga

104521 gggcccgtat tacccgccta cctgaaaggg acctagcaat aggaaagcgc ttgataacaa

104581 gcagcaggga aggagcctat gtacttacta aatggttacc gtttggcaag tttcactttg

104641 acgagtctat caggccatct tccaaggacc gtgtaatagg cgctcgaaag agagggaatg

104701 tgcgttaaat agaccttccg ggtttgaaga agctccgaag aaagtcaggt tagagagccg

104761 tgtgatgggc gactatctcg tacggttcgg agagcacttg agtagcccag atcggtgaac

104821 ggggtaaccc tgggaccgca tagggtggat tcttgactct atcccgcaaa tcccatgtca

104881 accccggctc atatagtgcc ggagcgcggt tcggacccaa caatatccgc taccgacgga