Marchantia polymorpha cox1.I1

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Information of Marchantia polymorpha cox1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

Note: This intron sequence occurs on the reverse complement of the original

GenBank sequence. Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

gtgcg acgctatgca tgctataatc gctgggtcaa accgcgccgg gacaattggt

42121 gctaaacccc acgtaactca gccgaaagtt agtaggagag tgatgtcctg cgttggggta

42181 gacggtctgg taagtctagg gaaacgaata ctaacgatgc gccctccgtt tctgtggagc

42241 gtaggcggtt ttctgcctac ggcttacgag tgccgttctc atccgaatat cttactttgt

42301 ggggagaaag gagcgtccct gagaaccgaa acgaaacgct cgtactgcgg tgatactaca

42361 agctcacctg atgcgctagg taagacaagc cattctgcgc gatttaggga tgacggcggc

42421 gagggtgggg ccgggtcacg ccccgggatg agttgtaaac cccatgccaa tggcggacgg

42481 gatagtgact caactgagaa ccggtcgggt aatgaacccc ctgctgtaac cgtccatatg

42541 gacggtggtg gttggaggcg gaaactcgaa actctcaaac ggaacgaaaa atccgggaaa

42601 tttgaaaaca tctactccat atgcacggac ccgaacttct tgattgcagc ctatgaacag

42661 attaagtccc acacgagtaa catgaccccg gaggggggcg aggaaaggga aaacctcttt

42721 cttcgtcaag tggcttcgcc cctggaaagt ctagatcggg cttggttcga aagaaccgcc

42781 gaattacttc gaagcgaaca gtttcgcttc aaactcgcac gtaggattat gatacccacg

42841 cctaacaagc ccagggaatt cagaccttta actattggga gcgacaatat tgttcagcaa

42901 gctatgaaaa tagtcatgga acatatatac gaacctaaat tcctcgacac ctcccacggg

42961 ttccgtcccg gaagagggtg tcactcgggg ttagaacaaa tttgcctgaa atggacagga

43021 gcgtcgtggt tccttgaatt tgacataaaa aggtgcttca attccatgga tcgacacaag

43081 ctggtcttca tcttacaaaa ggatatagaa gatcagaggt ggatggatct cgtgcataaa

43141 ctgttcaccg cgggacttgt tggcggcgag cttggtggtc cagaccccct tcaaggatca

43201 gtcctctccc cttggtcgag tcccccttgg gccctcgccc ctctattttg taatatttac

43261 ttgcacgatt tggaccaaga agtggccaag atggctaatg aactctcacg aagccgcaag

43321 cgaagagtcg acaaaaggac cacggcggct acgaggacgc ccagaacgaa ggcgttcaga

43381 gcgctgaccc cgcaggcgga aatcatgagg gtccgtagaa aggccgcccg gggactgtcc

43441 ccgactgata ggaaggaccc caactacgca cgcgcatttt acgttcgata tgcggggaat

43501 ttcctcctag gcattgccgg acccagggaa ctggtagcca cggtcaagag taggattgtg

43561 cagttcgtta attcggagct gcacctggaa ctcaccggag gttctatatc ccacataagc

43621 gccgaaagcg tgaaatttct gggaatggaa atcaaggttg taccctcctc gaaacttcga

43681 aggagattcg gcaaggccat ggagaagcga cgtagggtta ggaaccgtat ctttacccta

43741 aaagtacaaa aacggaaacg ccaagactcc ttggtccacg atgccttggt tagggcgctg

43801 ggtaaattgt cgaggaagca taactctgcg gggctggcaa aactcctgag tcccaaatac

43861 ccggaaatgg cggagttagc taaagccttg ttaagagaga tgcgagccga taacgagcta

43921 gtaaccgaca ttcgggactc gcaaaaaaac ttccacctgg ctttagcgag caggctagac

43981 tttgccccgg atgaggcacg ggaagccatg gagaaccttg agaggaaact cgacaagtgg

44041 tgcgatgagt gtgaagtccg aacccttttt gataaagata gggagaaggc tcgacgagaa

44101 cacgtgggaa gatacgaggc gctacctctg caaattttgg ccccattaaa ggagataagg

44161 aaaaggctta aattgtgggg ccttattacg gagaataaca aaccttgttg tgtggttaga

44221 ttgattcaac tcaacgacga agacattgtg ctttggttta attccgtagc tcgagaccta

44281 ttgaattact accgttgttg tgccaatttc tacaaggtac gagactacgt ggattatttc

44341 ttacgctggt ccttgataca cacaatggcc gggaaacata agacatcggc gacgaagctc

44401 atcagggcat tatcgataga tatggtcata aaggataacg agggggaaaa aataataagc

44461 tttctaagct ccaacgaaat tcgacggatg ggaagaatgt tcttgagggg catcccgtgt

44521 gactctgata tgcggactct ggaccgtatt tacgccacgt tcaggcgctc ccgtgcattg

44581 cggtgctctg tgaaggggcg cttcgaggat aaggtggaaa tgcaccatgt gcgcaagagg

44641 ctcctggatg cttttgggag gataacagta gtgaccaaaa agaataagag gggttacggg

44701 aatggatgcg ttcaaggttg ccataaatag aaagcaaata cctttgtgta cgtatcatca

44761 cgataaattg cacaagaggg aattgaagtt cgggggactg gattgggagt aggaccgata

44821 aaattccaag tgtatacgtc caatcgagag taggttcttg gagagccgtg tgatggaaga

44881 ctatcaagca cggttccacg agaagggcta atcctttact cgac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

aagtt ttgtgtgttt

41581 tgttatattt agtcaaaaaa catttggtga aactataaaa gctatttttg atgcgagaag

41641 cgaagctctt ctttccgatt tacagcaatg gatgagttat caagaagcta tgttgtccga

41701 attaaaaaaa cagcatgaat tacgtagtat aagcttgcgt tcaagtacac aaatgattgg

41761 agaatcatgt ataaatgata tggttacgcg ctgtgcgcca aagtgcaaac agacagtaaa

41821 atctgtgtta tgccaacaaa tagagcaaaa gttaaaaaca ctgttagcta ttcaagagca

41881 ttctcgtatc agtttacagg agaagatagt aacttgtttt cgcgaaacag tttgtgacga

41941 atttcgcttt tccaaattgc gaaaacatca gtcaaaacta gttcaacaaa gcatggtatt

42001 attgaaagat ggggttccga aatgaacaat tttgcacaaa gatggctgtt ttccacgaac

42061 cacaagtgcg acgctatgca tgctataatc gctgggtcaa accgcgccgg gacaattggt