Marchantia polymorpha cox1.I2

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Information of Marchantia polymorpha cox1.I2 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

Note: This intron sequence occurs on the reverse complement of the original

GenBank sequence. Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

45061 gcgcccggat atacatcgtc cgacaagaag agctatccac tcttctttgt gccatccagg

45121 ctagctaaca agctagggca caggctcaac ttgcagaggc gccatagtaa tatggcttac

45181 tcgggagcag caagtttcaa tcggggaacg gctgggctgc cacggctagg acgtcctgag

45241 agagcagaag gtagggccag gataactgac ttgacacgca atgctcgtat tacagtagac

45301 ctcttgtctc aagcagcaca ttatggcaag agcacgataa gtaagcctct acggaggtca

45361 gaactgtgca caatacattg tgtgtgcaca gtccctggaa aaatgtgggg cactctacac

45421 agataccagc tgagtaatca gctaattgcg caagggccta acccttcagg atctaagatc

45481 tttcttggct ttacgaagaa aggatcgaag tgtcttccgg acacgaagaa caaggactat

45541 gtaggagccg ggaaaataac ccgccctaat cgggatgggt ttcggagggc ccgtaatagc

45601 tgcggatttt tgcaatccag cctggcagtt aaggagccta gctctcgatc gtactgttct

45661 atcccggagg tctcggataa cgaaacatcg tctcgttcca acggctccgc ccgcccagcc

45721 cccaaagctg cctggtccga ccgtgtccgt atgtccgttt cggaacagat tcaagcttat

45781 ttaggcccgg acaataggta caatgggctg attcatatca tatcagaccc tacatttttg

45841 gccttgtgct atgaatccat ccgaggtaag ccagggacct ccgggtctga tgcgaaacct

45901 ttggatggtc cagaatggtt tgtacaagta ggtgagaaac ttaagaaggg ccaatttgag

45961 ttctcgcccg cgcgaagaat tacaaagccc ggcaaaaagg agaagcggcc cttaggcatc

46021 aacagccctg tcaaacaaaa aaagtgctac ggggaaaaga tcgtacaaaa agccttacag

46081 cttgtgcttg aggccatcta tgaacctatt tttctagatt gctcacatgg atttcgtatc

46141 caccgaagct gtcacacagc attaaagagg ctctgcttag agggaggtca ctatccttgg

46201 gttgtggagg gaaacattcg aaaatttttc gattcgatac ctcataaagt gatccttcac

46261 aaaatttcgc aaaaggtcaa gtgtcatcgt acgctcgaat tactccaaag ggctctccgt

46321 gcgggttaca aggatcctac ttccggtcag gtcataagtt tagacgaagg cacttcgcag

46381 ggctcggtgc tgagtccgct cctctgcaat atcatactac attacctcga cgaatttgtg

46441 atgaaacttc gtgatcgatt taacaagggc aaaagtagaa gaattaaccc agagtacaag

46501 ctattgactc gtcatatgaa tgcgaacaga caggatagat ctctcctgat taagcgcaga

46561 ttaatcccgt cgaaagatcc cttggaccct tactttcgaa gaattttata tgtacgatat

46621 gccgatgact ttgtcatttt agtaagcgga actcggttag aaactttcgc gattcaagcg

46681 tcgttacaaa actttctgca ccggagtctt aggttagagc ttagtttaga gaaaaccgtg

46741 gtctcacatc ttgcaaacaa gggattccat tttttaggta catactgcaa acgtacccga

46801 tctcgtcatc ggatcttcca tgtgcgcacg gtaagaggca agacgattaa gcagcgttca

46861 acagaacgtc ttcgggtttg tgcccccatt acgaaacttt tttacaagtt aaaagagaaa

46921 ggttttgtaa aacggaatga aatggggaaa tatgtaccca cggcgaggag gaatctaacc

46981 ccattggatc atgcagacat tttagaatta tacaatcaga aagtccgggg aaccctgaat

47041 tactactcgt tcgcgtcgaa tcgcagtagt cttaatcaga ttgtacatgt gttgcatatg

47101 tcctgtgccc tgactcttgc tttaaaatac aaactgaaga cagctagtaa gacttttaac

47161 cgcttcggta agtgccttac ctgtcctgct acgggtatga gtctatttcg accaagcgcc

47221 tacaaagcca tacacttata caatcctagt ccgattgccc gggctgagca ggttattgat

47281 attagctaga ggtcgacccg atccgctctt tttagaacat gtgctctttg cggatcaacg

47341 aaagtcgaga tgcatcatat ccgttatgtc aaagacgtta aggccaggat ccgatacgtc

47401 acttgcgctt attctgagtg gaagggcgcc ttgaaacgga agcagacccc cctctgttct

47461 caccatcaca gtgtgtatca caacggccag ttatctgagt cggaaatgtt agcactgtct

47521 ttgtacacaa tccatggaga gatgttcaat tataagattg aaagttcata gcaataagtg

47581 gagaccggag ttgcgagccg tttgaggtga aagcctcacg tacggttctg agggcagctg

47641 tgttgaaaga cctgactgac ccctac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

gt tcaggcgctc ccgtgcattg

44581 cggtgctctg tgaaggggcg cttcgaggat aaggtggaaa tgcaccatgt gcgcaagagg

44641 ctcctggatg cttttgggag gataacagta gtgaccaaaa agaataagag gggttacggg

44701 aatggatgcg ttcaaggttg ccataaatag aaagcaaata cctttgtgta cgtatcatca

44761 cgataaattg cacaagaggg aattgaagtt cgggggactg gattgggagt aggaccgata

44821 aaattccaag tgtatacgtc caatcgagag taggttcttg gagagccgtg tgatggaaga

44881 ctatcaagca cggttccacg agaagggcta atcctttact cgacagatat aggtactcta

44941 tatttaattt tcggtgccat tgctggagta atgggtacat gcttttcagt actaattcgt

45001 atggaattag cacaacccgg caaccaaatt cttggtggaa atcatcaact ttataatggt