Marchantia polymorpha cox2.I2

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Information of Marchantia polymorpha cox2.I2 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gggcgaccg ttaggtcacc

82441 catagttatg tcaatggggc tcaacacatg ggctctaaac cgcgcgagcc tatcttccgc

82501 gcgccaggta tacgactcat ccttgccacg taagtggtgg gagaccaaag catgtcgtaa

82561 aagcgagatt gaggggtcct tgtcgttcgc agctggactg tggaaagccc aagatcatct

82621 tgctaacctg ccatcgctat tcgagatgag gagctgttct ggcgaatcta agttcctttc

82681 ggtcgaattg aacctgatgc tatccggatc caacccggtg acacgcacga gcgcacgcat

82741 taaagctctc agcctgacaa tggtccaaag tgtacaggcc ggagatagtg cggtgcctat

82801 accccgcatg agagcagatt acctacatca ctggggacag ggaactaaaa gacatctcgt

82861 ggcgacacgg cctatcggtg ataccggtga gatcccagcg tggtcacacg tcctgggaag

82921 tcagaggatc catatgacct gcctactgtt aacgcaccct cgtaagagga aagcgctttg

82981 cgaacacaaa gcaacgggga agggatctaa gcatctgcca tacctttgca gattttactc

83041 gatatcgtct acaaactcag ccccctggga tcccaaggtg gatgtgtccg actatgtgcg

83101 gaatggggtt gatgcccttg tggacctttg gatctcgtct tttcgaaggc gtgactggat

83161 ataccatgat ctaagcaatt acctaaagag tatggatata tggagcatag cctaccaaaa

83221 actgagacct aatccagggt caatgaatcc tgggactcac ggtctgacca tcgatggcac

83281 gtctttccgt aagcttcaag cgctgagaga tgcagtcctg gacagcgaaa gcccatatga

83341 atggggaggc acgaaaatca ttaccaagcc gggtaagcgc gagaaaatat cacttggaat

83401 tccctgcttc caagaccgta tcgtgcaaga ggtactgaaa atgcttctag agcctatcta

83461 tgaatcaata ttctctcgga gatcccacgg ctggcgacct gggcgtagcg cgcacacggc

83521 tctacgaacc atacgcagcg acttcaaaaa aactaattgg attgtaccag gcaacattaa

83581 caaattattc gacatcgtga accatggcat cctctgccac atcatgagac gtaagatccg

83641 agacaaaaaa ctgctaaaac tcattgctgg cggattgaaa gcaaagatac acatgcccta

83701 tgggaacatt gaggagtcaa acttgggaac cccgcaaggc agaatactaa gtccaatact

83761 gtccaatata tatctacacg agttcgacat atggatagaa gagcgcatcc agcaatacaa

83821 tctaggaagg aaggagactc gtagctgggt gctgcttcgg aagcagggaa agatgcgtaa

83881 agcgcgcctc cgcagtgacc cattcaaccc attgtatcga agaatggagt acagacgata

83941 cggagatgac ttcctcatag ctatacgtgg ccccctgtct gatgctaaag ccattcgtca

84001 ggaatgcgaa accttcctaa gagagaaact caaattgcta ctgaacatgg aaaagaccca

84061 tataaaacat atatccgtgg gaattccttt cttggggcac cgtatcggac gccgagtagt

84121 acacacgaaa caaagatacc agacccaaga gggttggcga tggaggataa aaaagaaagt

84181 tatcctcacc atggacgcag acatgaacca gttgaagctg cgattgcaac agcaggctta

84241 ccttgctggg aatggagatc ctttaccaaa cttcggcttg atgagcttac ctcaaagcga

84301 agcaaaccga cgaatgaact caatcttgcg cggatacgcc aattggtatc agtttgccgg

84361 aaacaaacgc ggggccatcg cctatttggc ttacgtcttg cgttcctcct tggccaaaat

84421 gtttgcagcg aagtttaaac tgcactcttt gaagaaggta ttccagatag caggtaacga

84481 cttaggtagg gcgctcgaag cccgatatcc agtgggagtc actgactcac aagtggaagc

84541 ttggcaacag tctgtgagtg ggaaaggtac gcctagagac atcctgggct tttgggagat

84601 cagtcaacgg aacagggtcc gaagtagact tctcggacac acgaaaaagc gttgattggc

84661 ctgagcgata aagcagagat gtattaataa gagtgcgcga aatttcggaa gtacgtgtac

84721 agtcgtgtag tttcaactgc cccaatgacg cgctactcgt gtggcgtttt gctcaaggag

84781 tgaaaagaat ccccatgtgg acgatctccg gacaatgtca aaatcatgtg cggggcccgc

84841 cccctcgccc gaacacgctc cccgcacgtc cgtgcctatg ggtccgaaga cttctttgcc

84901 tttacagggc ccggaggccc gaagaagtgc gcggaaattg taaagccaaa ggggttctac

84961 aagctaaaga agtatccttc ggacccttcg gcccaaaaaa gcgtaccgcg tagcgccgcg

85021 ccttccttct aggtgcccac cgggcaactg gcagactagg ccagccccgc tatctgaact

85081 cggaaagtaa tccgaagtaa gtcgagttag tgagccgtag cacggtgacg tgctcatacg

85141 gttcggagag cacttgagta atcttataat gaggtgaaat ttttactcta t

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

gtaatgacc atgtgtagtc ttttgggggg atcacaatgg

81961 gaacgagtgt atctacacca catgaaagta ggcggcttct cctcgtgaca caaaatttgc

82021 aaatgaatct agaatgccct ctctctttgg tcgagtgttt gaaggacact ctttgccgaa

82081 atggctgaga aagaagggtc ttcgcactac gtgcctctcc ctatagtgct cgtgcgtgga

82141 aatcgtcaag ccatttccgg tgcgtaggcg tgtaagggag ttttgagaat gaaatggagc

82201 tgtatgaagg taaactttca cgtacagttc ttagggggga aagcccgtaa gggcctacct

82261 atccaaacta attgacttac ataatgatat ttttttcttt ttaatcgtta ttttgatctt

82321 tgtattatgg atgttggttc gcgctttatg gcattttcac tataaaagaa atccaattcc

82381 agaaaggatt gttcatggaa ctactataga aattatttgg agggcgaccg ttaggtcacc