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Information of Mesostigma viride cox2.I1 intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

 

Note:  This intron sequence occurs on the reverse complement of the original

GenBank sequence.  Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

                     gtgtgc cataaaaata tttttctaat gttttctttt tgattcctgc 

16801 cagaaaagga aaagctcaaa aaaaaactaa aactttttag taaagaattt ataaaaagag 

16861 aattccgtca agaaaaatat ttttatggaa ttatttggat ccactttagt aaagcttttt 

16921 atttagtttt tataaaaatt ttaaaaccgg tcttgaatag tggaaaggaa aaagcattat 

16981 tgatacggca aaaacaaaca taaaaagatc attaaatatt gtttataaac cgcctcgact 

17041 ttcttactgt ctggaatgcg aaaacgaaaa aaaaaggtat catatagaaa aaattgatga 

17101 aaattttaat acttcttttt ggataaataa gaggaaaaat ttaattcaat ttttatcttg 

17161 gaaattaaaa aatgcatcat atatatttca tggtcgttta tttaagagga atcaaggtcc 

17221 atacaaagaa atattagaaa aagaatattt cttttttcga gaaaattgga tgccgcgatt 

17281 tttttgcata agtgatccac atttttccct aaattcttct ttatttcttt ccgtggtcac 

17341 tgcaatttct gcattatcag atcctttaga tatttggata gaaaaatcgt tcggaaatga 

17401 aaaatttttt tattcacgtt ttatggatca atgtattgta gcatgttttt cagacgctga 

17461 ttttttaaat tcaaaatttg aaaaaatatc acaaaaatct tgttggaaat tttctaaatg 

17521 tttttccact gttccttttt tgggtggcac gctaattcac tcttcaacaa ggaaacccat 

17581 tgaatctaat gagctaaaaa gtattaataa tattaacagt tcttggaaat ggaaaatttc 

17641 atggaatgtt cttataaggt tttgtcaaaa tgaaagatat tttcatcaaa attctgcaaa 

17701 acctacggct gtgccctacc ttgttccacg aactcatgaa gagattttgg ctcattataa 

17761 aaaattaatt tttctttttt atctttatta caatcctatg caagatcacc aagcattcaa 

17821 ttgtttagta gatggtttaa aggaatcatg tatattgaca ttggccctta aatataaaat 

17881 gaaaagtaga actaaaataa ttcaaaaact ttttcctcaa aagctgtagg agtttttctc 

17941 acatacagtt ttttagggaa gtaaaaaaaa gaatttttta cttaccctcc

 

                                                                   

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[intron& flanking sequence]

 

Genbank entry, intron is marked as red

 

                                                                 agtaga 

16261 agaaatattt ttgtataaat gtatttaatt agaatttaaa aaagcaaccg gaaagcatct 

16321 tcagtagctc agaggtagag caaatggctg ttaaccattg ggtcgttggt tcaattccaa 

16381 cctggggagg ggggaggggg tagggggaag gggtagatat ttgtaaagtc attatttatt 

16441 aacgtgttaa ctgtaaacca gagtgtcagg taggagcacc tgcctctagg ctaaaccttt 

16501 tagtgtgttt ggaaagattt gaactttcaa ctttcagatt cgaagtctga cactctatcc 

16561 tattgagcta caaacactaa aaattttttt aagacccgat ttttgtaata tttaacaaat 

16621 tagacaaaaa taaaaagtga taacaagaag cgtaagtttt atggatgctc ctcgaccttg 

16681 ggctatggga tttcaagatc ctgcgacccc tattatgcaa ggaatcatcg atctacatca 

16741 tgatattttc ttttgtgtgc cataaaaata tttttctaat gttttctttt tgattcctgc 

16801 cagaaaagga aaagctcaaa aaaaaactaa aactttttag taaagaattt ataaaaagag 

16861 aattccgtca agaaaaatat ttttatggaa ttatttggat ccactttagt aaagcttttt 

16921 atttagtttt tataaaaatt ttaaaaccgg tcttgaatag tggaaaggaa aaagcattat 

16981 tgatacggca aaaacaaaca taaaaagatc attaaatatt gtttataaac cgcctcgact 

17041 ttcttactgt ctggaatgcg aaaacgaaaa aaaaaggtat catatagaaa aaattgatga 

17101 aaattttaat acttcttttt ggataaataa gaggaaaaat ttaattcaat ttttatcttg 

17161 gaaattaaaa aatgcatcat atatatttca tggtcgttta tttaagagga atcaaggtcc 

17221 atacaaagaa atattagaaa aagaatattt cttttttcga gaaaattgga tgccgcgatt 

17281 tttttgcata agtgatccac atttttccct aaattcttct ttatttcttt ccgtggtcac 

17341 tgcaatttct gcattatcag atcctttaga tatttggata gaaaaatcgt tcggaaatga 

17401 aaaatttttt tattcacgtt ttatggatca atgtattgta gcatgttttt cagacgctga 

17461 ttttttaaat tcaaaatttg aaaaaatatc acaaaaatct tgttggaaat tttctaaatg 

17521 tttttccact gttccttttt tgggtggcac gctaattcac tcttcaacaa ggaaacccat 

17581 tgaatctaat gagctaaaaa gtattaataa tattaacagt tcttggaaat ggaaaatttc 

17641 atggaatgtt cttataaggt tttgtcaaaa tgaaagatat tttcatcaaa attctgcaaa 

17701 acctacggct gtgccctacc ttgttccacg aactcatgaa gagattttgg ctcattataa 

17761 aaaattaatt tttctttttt atctttatta caatcctatg caagatcacc aagcattcaa 

17821 ttgtttagta gatggtttaa aggaatcatg tatattgaca ttggccctta aatataaaat 

17881 gaaaagtaga actaaaataa ttcaaaaact ttttcctcaa aagctgtagg agtttttctc 

17941 acatacagtt ttttagggaa gtaaaaaaaa gaatttttta cttaccctcc ttttaaccgc 

18001 agtaacattt tttgttatct ggatgttagc acgtattctt tttcatttta acgagaaaaa 

18061 aaatccaatt ccaaattatt atctagttca tggttctaca ttagaaattg tatggactct 

18121 aattccaagt tttattttaa tgttaattgc tttaccttca tttgcattac tttattctac 

18181 agatgaaatc gtagatcctg cagtaacaat taaagtaata ggtcatcaat ggtattggag 

18241 ttatgaatac tcagattatt tatctgatga gcaagattct aatattttgt ttgatagtta 

18301 tatggtgcca gaagatgaac tagaattagg agatcttcga ttattagaag tggataatcg 

18361 agtagttatc cctgcaaaaa ctcatgtacg ttttattatt actgctgcgg atgttcttca 

18421 cagttgggca gttccttcat taggagtaaa atgtgatgca attccaggtc gattaaatca 

18481 aacttctctt

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[ORF sequence]

 

219 a.a.

 

MPRFFCISDPHFSLNSSLFLSVVTAISALSDPLDIWIEKSFGNEKFFYSRFMDQCIVA

CFSDADFLNSKFEKISQKSCWKFSKCFSTVPFLGGTLIHSSTRKPIESNELKSINNIN

SSWKWKISWNVLIRFCQNERYFHQNSAKPTAVPYLVPRTHEEILAHYKKLIFLFYLYY

NPMQDHQAFNCLVDGLKESCILTLALKYKMKSRTKIIQKLFPQKL

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[secondary structure]

 not available

 

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