Mesostigma viride cox2.I1

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Information of Mesostigma viride cox2.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

Note: This intron sequence occurs on the reverse complement of the original

GenBank sequence. Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

gtgtgc cataaaaata tttttctaat gttttctttt tgattcctgc

16801 cagaaaagga aaagctcaaa aaaaaactaa aactttttag taaagaattt ataaaaagag

16861 aattccgtca agaaaaatat ttttatggaa ttatttggat ccactttagt aaagcttttt

16921 atttagtttt tataaaaatt ttaaaaccgg tcttgaatag tggaaaggaa aaagcattat

16981 tgatacggca aaaacaaaca taaaaagatc attaaatatt gtttataaac cgcctcgact

17041 ttcttactgt ctggaatgcg aaaacgaaaa aaaaaggtat catatagaaa aaattgatga

17101 aaattttaat acttcttttt ggataaataa gaggaaaaat ttaattcaat ttttatcttg

17161 gaaattaaaa aatgcatcat atatatttca tggtcgttta tttaagagga atcaaggtcc

17221 atacaaagaa atattagaaa aagaatattt cttttttcga gaaaattgga tgccgcgatt

17281 tttttgcata agtgatccac atttttccct aaattcttct ttatttcttt ccgtggtcac

17341 tgcaatttct gcattatcag atcctttaga tatttggata gaaaaatcgt tcggaaatga

17401 aaaatttttt tattcacgtt ttatggatca atgtattgta gcatgttttt cagacgctga

17461 ttttttaaat tcaaaatttg aaaaaatatc acaaaaatct tgttggaaat tttctaaatg

17521 tttttccact gttccttttt tgggtggcac gctaattcac tcttcaacaa ggaaacccat

17581 tgaatctaat gagctaaaaa gtattaataa tattaacagt tcttggaaat ggaaaatttc

17641 atggaatgtt cttataaggt tttgtcaaaa tgaaagatat tttcatcaaa attctgcaaa

17701 acctacggct gtgccctacc ttgttccacg aactcatgaa gagattttgg ctcattataa

17761 aaaattaatt tttctttttt atctttatta caatcctatg caagatcacc aagcattcaa

17821 ttgtttagta gatggtttaa aggaatcatg tatattgaca ttggccctta aatataaaat

17881 gaaaagtaga actaaaataa ttcaaaaact ttttcctcaa aagctgtagg agtttttctc

17941 acatacagtt ttttagggaa gtaaaaaaaa gaatttttta cttaccctcc

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

agtaga

16261 agaaatattt ttgtataaat gtatttaatt agaatttaaa aaagcaaccg gaaagcatct

16321 tcagtagctc agaggtagag caaatggctg ttaaccattg ggtcgttggt tcaattccaa

16381 cctggggagg ggggaggggg tagggggaag gggtagatat ttgtaaagtc attatttatt

16441 aacgtgttaa ctgtaaacca gagtgtcagg taggagcacc tgcctctagg ctaaaccttt

16501 tagtgtgttt ggaaagattt gaactttcaa ctttcagatt cgaagtctga cactctatcc

16561 tattgagcta caaacactaa aaattttttt aagacccgat ttttgtaata tttaacaaat

16621 tagacaaaaa taaaaagtga taacaagaag cgtaagtttt atggatgctc ctcgaccttg

16681 ggctatggga tttcaagatc ctgcgacccc tattatgcaa ggaatcatcg atctacatca

16741 tgatattttc ttttgtgtgc cataaaaata tttttctaat gttttctttt tgattcctgc