Neurospora crassa cox1.I1

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Information of Neurospora crassa cox1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgc cgatgtgttt tggcgttggg

241 ttggtcttta ttagaccctt gatgtttggt caagtaaagt ggcctccggc cggggagatc

301 gaatctctcg gggaaaccca aacggctaag cggaggttaa agggtagaaa cttaataaat

361 atagctatta taggacttct acctcaacta agttatacaa cgattaggtt aacgaatctg

421 tttacatttg acctgtcatg atcgggacgc ctgctacgct atattaagag caggagagcg

481 ttgtccggac attttatcat cagtttgatc cgccaaacaa tgacgacgct aggtaacaca

541 catagtgatt gtatttcaaa taccaaatgc agagatccta gtataacaat tgccctcgct

601 aaggaacttc gggatcacct acgggtggcc ttaggcttaa acctaggggt acctaagtac

661 catggcattg ccatgggcct taatcgtaga ttagggggtg acggagctat cgtagtacga

721 ggaaaactcg gaagggtagc agtacctagt caaatgattc gaacgatatc ttcaaaagcc

781 ggccaatcgg cgaaacgtgg cagcgacgat atcatagttt caacgtcccc gaaagatatt

841 aacatgaaag ctatagccaa catgaaaaac ttagttgtag cctatgaact tatcaagagt

901 aatcccggaa acatgactaa gggtgcaaac ccggaaacct tggatgggat gaatcttaaa

961 ttcctggaaa aaattcagag agatctcaga gatgggaagt ttgaatttcc accggctaga

1021 cggatacaaa tccctaagcc aggtaaaaag gaaacgaggc cgttaacaat agcgtcacct

1081 cgtgataaag ttgtccaaaa ggctattcag ttagtcatgg aaccagtgtt cgagaaaatc

1141 ttcttagatt gttcacacgg ctttagacct cacagaggaa caaaaactgc tatacaatat

1201 gtagacgcaa agttccaaag tagtcatttc ataatcgagg ctgatttctc taaggccttt

1261 gattctatcg ctcattctaa attaatggag ttcctcaagg agactataac ttgtgagaag

1321 acccttaaac tgataaggtc agggttgaaa gcaggttata tcgaattcgg ggagctacat

1381 aataatttgg atataggaac cccacaaggt tccatcctaa gtcctttatt gtgtaatata

1441 ttcttacata gacttgatct tttcatggaa agtattaaag ctgaatttaa tattggagtg

1501 aaaaagaaaa gatctaagga gtatatggca ctaatgaata aatgcaggta catgagaagt

1561 aaagggcagg atatctccaa cccggaacta tatcatgcta ttcgtaataa aatgttgact

1621 actcccagtg tgacaaaaga tgattcttat gtaagggtca attatgtcag atatgcggac

1681 gattttatca ttggagtgga aggtagtcac aaaactgcag tagcaatact ggagaaagta

1741 caatccttcg taactaacca attgggtcta aggttaaatc ctgataaaac aggaataacc

1801 aaatactctg tggatccggt caaattcttg ggttacaaga tgaaggctcc ccacatgaag

1861 ggtatagtaa aacctatgga agtattgaac gctaagtaca atactctcga aggaactgag

1921 acccgtacca tcgcaagacg taagaaaatc agaattagat ttcatatgga ctacgaaaag

1981 gtattaaaaa ggttagaaac aaaccgcttc ataagaaaaa gaacttcgca tactgtacac

2041 aacaaattga tctacagagg aacatttaag ggtaacctta tcaacctgga tcatgccgac

2101 attataaatt attacaactc agtaatgagg ggtatatata attattacga ctttacctct

2161 aacgccccta acttagctaa tgttatgtga ctactcactg agtcgtgcgc actaacattg

2221 gcccggaaat acaagcttaa aacactaagt aaggttttca ggaagttcgg taaggaccta

2281 ggttgcgaca ttgaatcagc gaaaggggaa aaaaggagaa tatccatctt caaaccggag

2341 gacttcaaaa agaagtccat catgaacggc tcgaatccca caagggatcc attcgccggg

2401 attgacaaag tttgaaatgc taagtttact cgttcaaatt tattcgcaac atgtataatt

2461 tgtggagaga cgaaagatgt agagatgcat cacgtccgta agattagaga tctgagaaat

2521 caggaatcta agctagactt cttcacaaga caaatggctg caataaatag aaaacaagta

2581 ccattatgta aaactcatca cattggttta cataataaca cttgatctga ggcagacaaa

2641 gctaccttcc gcgaattagc aaaaaaacca agtgttaaat cgaaaaagaa agaatcgaac

2701 tgaaaggcaa agcaaaaaaa taattaatca aatagggtgt acgtcgcaga ttgctaagac

2761 taagtatgga aagccgtatg acgggagact gtcacgtacg gtttggtggc aggcaggaac

2821 cgcaagggac ctaggcctag ccaac

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[intron& flanking sequence]

Genbank entry, intron is marked as red

1 atgtcgtcaa tttcgatttg aactgaaaga tgatttttat caacgaatgc taaagatata

61 ggagttcttt atctaatctt tgcgctattt tctgggttac ttggaacagc attttctgtt

121 ttaataagaa tggagttaag cggacctggg gtgcagtaca ttgcagataa tcaattatac

181 aatgctataa taactgcaca tgcgatctta atgagtgcgc cgatgtgttt tggcgttggg