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Information of Neurospora crassa cox1.I1 intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

3' end

                    

                                          gtgcgc cgatgtgttt tggcgttggg 

 241 ttggtcttta ttagaccctt gatgtttggt caagtaaagt ggcctccggc cggggagatc 

 301 gaatctctcg gggaaaccca aacggctaag cggaggttaa agggtagaaa cttaataaat 

 361 atagctatta taggacttct acctcaacta agttatacaa cgattaggtt aacgaatctg 

 421 tttacatttg acctgtcatg atcgggacgc ctgctacgct atattaagag caggagagcg 

 481 ttgtccggac attttatcat cagtttgatc cgccaaacaa tgacgacgct aggtaacaca 

 541 catagtgatt gtatttcaaa taccaaatgc agagatccta gtataacaat tgccctcgct 

 601 aaggaacttc gggatcacct acgggtggcc ttaggcttaa acctaggggt acctaagtac 

 661 catggcattg ccatgggcct taatcgtaga ttagggggtg acggagctat cgtagtacga 

 721 ggaaaactcg gaagggtagc agtacctagt caaatgattc gaacgatatc ttcaaaagcc 

 781 ggccaatcgg cgaaacgtgg cagcgacgat atcatagttt caacgtcccc gaaagatatt 

 841 aacatgaaag ctatagccaa catgaaaaac ttagttgtag cctatgaact tatcaagagt 

 901 aatcccggaa acatgactaa gggtgcaaac ccggaaacct tggatgggat gaatcttaaa 

 961 ttcctggaaa aaattcagag agatctcaga gatgggaagt ttgaatttcc accggctaga 

1021 cggatacaaa tccctaagcc aggtaaaaag gaaacgaggc cgttaacaat agcgtcacct 

1081 cgtgataaag ttgtccaaaa ggctattcag ttagtcatgg aaccagtgtt cgagaaaatc 

1141 ttcttagatt gttcacacgg ctttagacct cacagaggaa caaaaactgc tatacaatat 

1201 gtagacgcaa agttccaaag tagtcatttc ataatcgagg ctgatttctc taaggccttt 

1261 gattctatcg ctcattctaa attaatggag ttcctcaagg agactataac ttgtgagaag 

1321 acccttaaac tgataaggtc agggttgaaa gcaggttata tcgaattcgg ggagctacat 

1381 aataatttgg atataggaac cccacaaggt tccatcctaa gtcctttatt gtgtaatata 

1441 ttcttacata gacttgatct tttcatggaa agtattaaag ctgaatttaa tattggagtg 

1501 aaaaagaaaa gatctaagga gtatatggca ctaatgaata aatgcaggta catgagaagt 

1561 aaagggcagg atatctccaa cccggaacta tatcatgcta ttcgtaataa aatgttgact 

1621 actcccagtg tgacaaaaga tgattcttat gtaagggtca attatgtcag atatgcggac 

1681 gattttatca ttggagtgga aggtagtcac aaaactgcag tagcaatact ggagaaagta 

1741 caatccttcg taactaacca attgggtcta aggttaaatc ctgataaaac aggaataacc 

1801 aaatactctg tggatccggt caaattcttg ggttacaaga tgaaggctcc ccacatgaag 

1861 ggtatagtaa aacctatgga agtattgaac gctaagtaca atactctcga aggaactgag 

1921 acccgtacca tcgcaagacg taagaaaatc agaattagat ttcatatgga ctacgaaaag 

1981 gtattaaaaa ggttagaaac aaaccgcttc ataagaaaaa gaacttcgca tactgtacac 

2041 aacaaattga tctacagagg aacatttaag ggtaacctta tcaacctgga tcatgccgac 

2101 attataaatt attacaactc agtaatgagg ggtatatata attattacga ctttacctct 

2161 aacgccccta acttagctaa tgttatgtga ctactcactg agtcgtgcgc actaacattg 

2221 gcccggaaat acaagcttaa aacactaagt aaggttttca ggaagttcgg taaggaccta 

2281 ggttgcgaca ttgaatcagc gaaaggggaa aaaaggagaa tatccatctt caaaccggag 

2341 gacttcaaaa agaagtccat catgaacggc tcgaatccca caagggatcc attcgccggg 

2401 attgacaaag tttgaaatgc taagtttact cgttcaaatt tattcgcaac atgtataatt 

2461 tgtggagaga cgaaagatgt agagatgcat cacgtccgta agattagaga tctgagaaat 

2521 caggaatcta agctagactt cttcacaaga caaatggctg caataaatag aaaacaagta 

2581 ccattatgta aaactcatca cattggttta cataataaca cttgatctga ggcagacaaa 

2641 gctaccttcc gcgaattagc aaaaaaacca agtgttaaat cgaaaaagaa agaatcgaac 

2701 tgaaaggcaa agcaaaaaaa taattaatca aatagggtgt acgtcgcaga ttgctaagac 

2761 taagtatgga aagccgtatg acgggagact gtcacgtacg gtttggtggc aggcaggaac 

2821 cgcaagggac ctaggcctag ccaac

 

                                                                   

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[intron& flanking sequence]

 

Genbank entry, intron is marked as red

 

   1 atgtcgtcaa tttcgatttg aactgaaaga tgatttttat caacgaatgc taaagatata 

  61 ggagttcttt atctaatctt tgcgctattt tctgggttac ttggaacagc attttctgtt 

 121 ttaataagaa tggagttaag cggacctggg gtgcagtaca ttgcagataa tcaattatac 

 181 aatgctataa taactgcaca tgcgatctta atgagtgcgc cgatgtgttt tggcgttggg 

 241 ttggtcttta ttagaccctt gatgtttggt caagtaaagt ggcctccggc cggggagatc 

 301 gaatctctcg gggaaaccca aacggctaag cggaggttaa agggtagaaa cttaataaat 

 361 atagctatta taggacttct acctcaacta agttatacaa cgattaggtt aacgaatctg 

 421 tttacatttg acctgtcatg atcgggacgc ctgctacgct atattaagag caggagagcg 

 481 ttgtccggac attttatcat cagtttgatc cgccaaacaa tgacgacgct aggtaacaca 

 541 catagtgatt gtatttcaaa taccaaatgc agagatccta gtataacaat tgccctcgct 

 601 aaggaacttc gggatcacct acgggtggcc ttaggcttaa acctaggggt acctaagtac 

 661 catggcattg ccatgggcct taatcgtaga ttagggggtg acggagctat cgtagtacga 

 721 ggaaaactcg gaagggtagc agtacctagt caaatgattc gaacgatatc ttcaaaagcc 

 781 ggccaatcgg cgaaacgtgg cagcgacgat atcatagttt caacgtcccc gaaagatatt 

 841 aacatgaaag ctatagccaa catgaaaaac ttagttgtag cctatgaact tatcaagagt 

 901 aatcccggaa acatgactaa gggtgcaaac ccggaaacct tggatgggat gaatcttaaa 

 961 ttcctggaaa aaattcagag agatctcaga gatgggaagt ttgaatttcc accggctaga 

1021 cggatacaaa tccctaagcc aggtaaaaag gaaacgaggc cgttaacaat agcgtcacct 

1081 cgtgataaag ttgtccaaaa ggctattcag ttagtcatgg aaccagtgtt cgagaaaatc 

1141 ttcttagatt gttcacacgg ctttagacct cacagaggaa caaaaactgc tatacaatat 

1201 gtagacgcaa agttccaaag tagtcatttc ataatcgagg ctgatttctc taaggccttt 

1261 gattctatcg ctcattctaa attaatggag ttcctcaagg agactataac ttgtgagaag 

1321 acccttaaac tgataaggtc agggttgaaa gcaggttata tcgaattcgg ggagctacat 

1381 aataatttgg atataggaac cccacaaggt tccatcctaa gtcctttatt gtgtaatata 

1441 ttcttacata gacttgatct tttcatggaa agtattaaag ctgaatttaa tattggagtg 

1501 aaaaagaaaa gatctaagga gtatatggca ctaatgaata aatgcaggta catgagaagt 

1561 aaagggcagg atatctccaa cccggaacta tatcatgcta ttcgtaataa aatgttgact 

1621 actcccagtg tgacaaaaga tgattcttat gtaagggtca attatgtcag atatgcggac 

1681 gattttatca ttggagtgga aggtagtcac aaaactgcag tagcaatact ggagaaagta 

1741 caatccttcg taactaacca attgggtcta aggttaaatc ctgataaaac aggaataacc 

1801 aaatactctg tggatccggt caaattcttg ggttacaaga tgaaggctcc ccacatgaag 

1861 ggtatagtaa aacctatgga agtattgaac gctaagtaca atactctcga aggaactgag 

1921 acccgtacca tcgcaagacg taagaaaatc agaattagat ttcatatgga ctacgaaaag 

1981 gtattaaaaa ggttagaaac aaaccgcttc ataagaaaaa gaacttcgca tactgtacac 

2041 aacaaattga tctacagagg aacatttaag ggtaacctta tcaacctgga tcatgccgac 

2101 attataaatt attacaactc agtaatgagg ggtatatata attattacga ctttacctct 

2161 aacgccccta acttagctaa tgttatgtga ctactcactg agtcgtgcgc actaacattg 

2221 gcccggaaat acaagcttaa aacactaagt aaggttttca ggaagttcgg taaggaccta 

2281 ggttgcgaca ttgaatcagc gaaaggggaa aaaaggagaa tatccatctt caaaccggag 

2341 gacttcaaaa agaagtccat catgaacggc tcgaatccca caagggatcc attcgccggg 

2401 attgacaaag tttgaaatgc taagtttact cgttcaaatt tattcgcaac atgtataatt 

2461 tgtggagaga cgaaagatgt agagatgcat cacgtccgta agattagaga tctgagaaat 

2521 caggaatcta agctagactt cttcacaaga caaatggctg caataaatag aaaacaagta 

2581 ccattatgta aaactcatca cattggttta cataataaca cttgatctga ggcagacaaa 

2641 gctaccttcc gcgaattagc aaaaaaacca agtgttaaat cgaaaaagaa agaatcgaac 

2701 tgaaaggcaa agcaaaaaaa taattaatca aatagggtgt acgtcgcaga ttgctaagac 

2761 taagtatgga aagccgtatg acgggagact gtcacgtacg gtttggtggc aggcaggaac 

2821 cgcaagggac ctaggcctag ccaacttttc tttatggtta tgccagcatt aataggtgga 

2881 tttggtaatt tcttgttacc attattagta gggggtcctg acatggcaaa agaacagggt 

2941 ccccttgaga aaaaattaaa agtttgtaac ataaatataa gtagtgtatc taataataat 

3001 aatagtaatt taggttcata tatagccggt ttatttgaag gtgatggtca tatatggatt 

3061 caaaaccagg cggtgaaagg taaaaagact cataatccta gattttgtat aacttttggg 

3121 ttaaaaaatg aggctttagc caaaaaatta cttgatatta taggatcagg atttataaga 

3181 tataaatcta aagataatgc ttgtgtttta gtagtttcac ctgtagtagg tttaaaaaag 

3241 atagttaatt taataaatgg tgaattaagg actcctaaaa tacatcaact ttataatcta 

3301 atagattggt taaataaaaa tcatagtaca ggtataaaga aatta                                                                

 

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[ORF sequence]

 

836 a.a.

 

APMCFGVGLVFIRPLMFGQVKWPPAGEIESLGETQTAKRRLKGRNLINIAIIGLLPQL

SYTTIRLTNLFTFDLSWSGRLLRYIKSRRALSGHFIISLIRQTMTTLGNTHSDCISNT

KCRDPSITIALAKELRDHLRVALGLNLGVPKYHGIAMGLNRRLGGDGAIVVRGKLGRV

AVPSQMIRTISSKAGQSAKRGSDDIIVSTSPKDINMKAIANMKNLVVAYELIKSNPGN

MTKGANPETLDGMNLKFLEKIQRDLRDGKFEFPPARRIQIPKPGKKETRPLTIASPRD

KVVQKAIQLVMEPVFEKIFLDCSHGFRPHRGTKTAIQYVDAKFQSSHFIIEADFSKAF

DSIAHSKLMEFLKETITCEKTLKLIRSGLKAGYIEFGELHNNLDIGTPQGSILSPLLC

NIFLHRLDLFMESIKAEFNIGVKKKRSKEYMALMNKCRYMRSKGQDISNPELYHAIRN

KMLTTPSVTKDDSYVRVNYVRYADDFIIGVEGSHKTAVAILEKVQSFVTNQLGLRLNP

DKTGITKYSVDPVKFLGYKMKAPHMKGIVKPMEVLNAKYNTLEGTETRTIARRKKIRI

RFHMDYEKVLKRLETNRFIRKRTSHTVHNKLIYRGTFKGNLINLDHADIINYYNSVMR

GIYNYYDFTSNAPNLANVMWLLTESCALTLARKYKLKTLSKVFRKFGKDLGCDIESAK

GEKRRISIFKPEDFKKKSIMNGSNPTRDPFAGIDKVWNAKFTRSNLFATCIICGETKD

VEMHHVRKIRDLRNQESKLDFFTRQMAAINRKQVPLCKTHHIGLHNNTWSEADKATFR

ELAKKPSVKSKKKESNWKAKQKNN

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[secondary structure]

 

 

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