Oenothera berteriana nad1.I4

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Information of Oenothera berteriana nad1.I4 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

481 gcggggcttt gcatctgaca ttcgttgggc ttccctcttc gagagcctgc gtcccggctt

541 gtgcaataaa cccctccggc cgaagactag tggtaggtgg tcccgcggag ctttcggaga

601 agggtagcct agtgtgtaag cacagcaatg aaccgcggcg aaccctcaga cgccctatct

661 aagattaggg ggggatcctc agtagtggtg acccttgctt gaactcttcc tcggactgat

721 acatgtaccg aatgctcata cgggaaagtt gactcctggg tctggaactg gggggttgct

781 ccgagaaatc ctttctttct cgtccactca ggggggtgcg gacacacctg cgcggattac

841 aggtgacggt tacaagaatg gcggggaagt gaacagtacc cgacgacatt cagggatgga

901 tgtagaccca tcggcaggga taatcattcc ggtcctggga gaggtggcga ccattctcaa

961 gaaccaaaaa gactgagctg agggaagccc tatgagtcac tgaaacgacg gcaggagggc

1021 ctttgatcta tcaatagggg agcaaaaaat gggctttgct cccctaacca atatgaagaa

1081 agaaataagg gtcgaagttt agaccgctaa cagtagttct acctatagaa aagatcatga

1141 aagaggcgat cagaatggta ctcgaatcca tttacgatcc cgagtttcca gacacatcgc

1201 acttccgctc gggtcgaggc tgccactcgg ccctaagacg gatcaaagaa gagtggggaa

1261 cctctcgctg gtttttggaa ttcgacatca ggaagtgttt tcacaccatc gaccgacatc

1321 gactcatccc aatctttaag gaagagatcg acgatcccaa gttcttttac tccattcaga

1381 aagtcttttc tgccggacga ctcgtaggag gtcagaaggg cccttactcc gtcccacaca

1441 gtgtactact atcgccgcta ctgggcaaca tctacctaca caagctcgat caggagatag

1501 ggaggatccg acagaagtac gaaattccga ttgttcagag aatcagatcg gttctattaa

1561 ggacaggtcg tattgatgac caaaaaaact ctggagaaga agcaagcttc aacgctccac

1621 aagacaacag agccatcatt gtggggaggg taaagagcat ccaacgcaaa gcggcctttc

1681 attcccttat ttcgtcgtgg cacacccccc ccacaagcac cccccggctc aggggggacc

1741 agaaaaggcc tttcgttttc cccccttcgt cggcccttgc cgccttcctt aacaagccct

1801 cgagcctcct ttgcgccgcc ttcctcatag aatccgccgg gtttagccct caggccgaat

1861 tcgatggtag agaacgctgt aataataatt gggccatgag agaccttatt aagtattgca

1921 aaagaaaggg cctgctgata gagctgggcg gggaggcgat actagttatc aggtcagaga

1981 gacgtttggc ccgtaagctg gcccccttaa aaacccaaac ctttataagg atttgttacg

2041 cgcgatatgc cgacgactta ctactgggaa tcgtgggtgc cgtagagctt ctcatagaaa

2101 tacaaaaacg tatcgcccac ttcctacaat ccggcctgaa ccttggggta ggctctgcag

2161 gatcaacaac aatagctgca cggagtacgg ttgaattcct cggtacggtc attcgggaag

2221 tccctccgag gacgactccc aacaaatttt tgcgagacgt ggagaagcgt ctacgggtaa

2281 agcaccgtat ccatataact gcttgccacc tacgctccgc catccattcc aagtttagga

2341 acctagagtt gagtatcccg atcaaagagc tgacgaaggg gatgagcgga acagggagtc

2401 tactggacgg ggttcaacta gtggagactc ttggaaccgc tggagtaatc agtcccaaag

2461 tgagcgtatt atgggggacc gtaaagcaca tccggcaagg atcaaggggc atctcattgt

2521 tgcatagctc aggtcggagc aaggtgccat cggaccttca acaggcagtc tcacgatcgg

2581 gcatgagtgt ccagaagttg tcattgtata ctcccgcggg tcggaaggcg gcgggggaag

2641 gaggaggaca ctggacggga tctatcagca gcgaattccc catacggata gaggcgccta

2701 tcaaaaagat actccggagg cttcgggatc gaggtctcat tagccgaaga agaccctggc

2761 caatccacgt ggcctgcttg acgaacgtca gcgacggaga catcgtaaat tggtccgcgg

2821 gcatcgcgat aagtcctctg tcctactaca ggtgctgcga caacctttac caagtccgaa

2881 cgattgtcga ccaccagatc cgctggtctg caatattcac cctagcccac aagcacaaat

2941 cctcgacgcg gaatataatc ctaaagtact ccaaagactc aaatatagta aatcaagaag

3001 gtggtaagcc ccttgcagag ttccccaaga gcatagagct tggaaagctc ggacccggtc

3061 aagatccgaa caacaaggag cactcaaata ctagtctagt ctagtagtcg ttttgttcta

3121 ttagttgcaa tgcgaacagg cgtttactta tgagattagt tgagtaggct tgcgttagtt

3181 atctgctagt gtttagctag ttttggggct ttcgacataa aaaagcctat ccggccggcc

3241 tggcttcgct atcgctcatg acttgtattg tagtcggtcc ggaagttcgt ttctggcgac

3301 tagcttctac cgctagcgct tggacttgga agcaagctac agctaccttg aatcaatcaa

3361 tgaatgaatg aaaaggaacc gcttaccgag gaatagaaag ggaggacagg ttggttcgag

3421 gacccgttgg tcaaaggaag gggggtccag attccgggac ggagccgtat gacgcgagag

3481 tgtcacgtac ggttcctttg agaagggtgt gataccacca cctatcaggc ccgacgagcg

3541 gtccacggag ctgcatccct actcacc

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

1 ggctaccctc gactcattcc ttattatatc tcaaataaac ccctccctga agagagcaga

61 agctccagga tgagtatgtc ctggattccc ggattcattc tcgtcctgat ccaactagag

121 tttttcgaaa tctacttttt gattgacgga gagggctcgg tttgatcttc tcaaagatca

181 taaggtgctg aagtggcagg agttgggggc gatctttagg tttttgtgaa agggatgctc

241 aactcatgtt atttctgaaa agaaaaaccg aattcttgat gtcgattcat ccacacttcc

301 attccttgta gaggaaggct aactgcttgc tggctgggag ctgtatgagc ggtaacgtcc

361 acgtacggct ccgtgagaag ggcggtggac agaaatggcc ttgttgtacc tcactctcgt

421 cttcaatggg gtctgctcta ttttttttgg gagagtatgc caatatgatc ttaatgaggt