Podaspora anserina ND5.I4

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Information of Podaspora anserina ND5.I4 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgc tgatgagctt tattttgaaa tggagatata atctctaaac attggtcaaa

75301 tatgtttctg actacgaaat taggtggcgg ggaaatccca aagttgaaca tagcattttc

75361 gcataatgaa gagattagat ccaatcatgg ggatcgatta gctcttctag tcaagttttc

75421 tatgattaag actatactgt ttgaagttca tctaccagtt gtctcaagcc atggacttca

75481 gcgagcctga gataggctga atgcggcaaa cctttttctt gaacttttgg atagggttat

75541 ggcctgtccg caaacgaatt gcataaacaa tttcaaggta gagagtgaac aatctaagga

75601 aaacaaaatt caaaatatat gaagatcagg attacctaag actagaaata gttatggtaa

75661 cagaggagta gtattaccct ttgtatatta taacaatata tattgtcctt taaaaaaggg

75721 gataagggga agaactctag attttaattt tagattgcta tccactagtg ctgggagtcc

75781 agtacagata aaatctaaca ctaatgataa gcttctaaag ctagctaagc attgtaaaaa

75841 gaattttaat ggtcaaatcc aaatggacaa attataccga ttaatgtatg attcagcact

75901 gtatgaattg gcatataaaa agctaggcgc tagttctggg cgcaaattcg gcgcaagctc

75961 tggagggaat ataaatcagg cgggtattaa tattaaaccc cttgaccata accactaccc

76021 tttagtagga tccgcagaga tgttatctga agtaattgaa ggaattattg ctgagttgaa

76081 agatagtagg tttagatttg aaggaaaaaa ggtaaaaacc ctagtaagta gacctcttac

76141 tacttttaga aataaactgg tacaagaggt aatgagaatg attttagaag ttatattcga

76201 accaactttc tctgaacaca accatgggtt taggccagga agggggtgtc attcggcttt

76261 gaaagaaatt aaggcgcaag ctataaattt tggagtatca acctgatatt ttgaaggaga

76321 tatttctaaa tacttagtta cttgtgctga cgaagttatg catgcaagct cctcttttgt

76381 tacttcgaga cgtggcggcg acggtggcgg caaagccgca gcagcagccg cgctcgtaag

76441 ttctcaaata gaaagagtct taatgaatat aattgaaaat aaaattaaag accgtaggtt

76501 tacagattta atatgaaaag ctttaaaagc tggatatttt gaatttaaaa tattcaaaga

76561 ttcaaataca ggtactactc aaggtgatat acttagccct attttaagta acatttatct

76621 aaatgaatta gatagattta ttagtaagtt aaaattagag tacgataaag gaattaaacc

76681 taaagtaaat ccttattata acaaactttg taatatgaag aataaaactc ttgatgtaca

76741 aactaggatc cgtatccata agttacactt gaagactcct tattataaaa cactagatcc

76801 tagtttcaag aaattagtat atgtaagata tgctaatgtt tgggttatag gtgttagagg

76861 atccaaagag gattgtaaca ttctgttaga aaaaatagaa atatttttta aagataaatt

76921 aaatattggg ggcgcaagct ctcgcgcaag ctcgagtttt gagcttgtgc ctaaaaccct

76981 atctagtata actaatgcta aaaaggtctt attcttggat acggtaatat tcagtagctg

77041 acacagaaaa catcaatctt tgacttccag ttcatctggg ttcatgctaa gaaatggtag

77101 agaaattaga cttgaagcac ctaaacaaat aatactacaa aaactaaatg aagccggttt

77161 tataactaat gggaaaccat ctcctaaatt actatgacaa cattataata aggacacaat

77221 aataacatta tataattctg tatataggta tattaattat tatagttttg ctgaaaatat

77281 ttccaaaatt tcttcatgac ttcactttat attaaaaact tcttgtgtga aattattggc

77341 atccaaattt aaattaggaa ctatatgtaa aacttatttt aaatttggaa aagatttaaa

77401 aggagataat aaaatcggtt ttgtggatgc gatggcttat ggaataaata tttgagactt

77461 taagatatca actaaaggta taattcaaat cctatatgct ggaacaaaaa cctctagagg

77521 cggagccgcg aagccgctaa ggagcaaagc cgcgaagcca gaaagccgcc gcactaaaat

77581 ttaataaaat taatggatta aaggttaaaa tagtgctttc gaggaggcta cgtatacgaa

77641 gtatgcttta tatatagcgc tatatatagc gcagctcctc ctcgacatac tttgtcagta

77701 tgtatgtatg tcagcactaa tattattata accagacagt aataccacta tatatataat

77761 gcaaacgctt agtatattaa aattggagag ccgtatgatg ggaaactatc acgtacggtt

77821 cgggaaaagg tatatatact gataagaggt atacgtatct agttcat

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

aaaatt aaaaagaata

74761 gaatcctacg agcttgcgcc gtcgtatggt gacttttgct gctatgtacg gcgctatata

74821 tagcgctata tatagcgagg cgcaagctcc tcctcctcgt agggcttact tatatgcttg

74881 cagacttcgt acgcatactt atttgcggcg tagccgtcag aagtatagct gtcagaagca

74941 tgaagtatag caggaacagt aggatgaaaa tggacaatcc gcaggaaact aagaataatt

75001 ctaatttatt taaggatcct cagagactac acgttatacg ccctttatcc ataatgttgt

75061 gcatacttcg tctgcctaaa acatatgttg aacaagggtg aaaatatagt ccagttatag

75121 ctgaaaagtt ataagttatt cgaatttaga ttatagtaca gtattttcat tagcccctta

75181 tattaacagt aaagtagttc ttattatagg tatatgttta ttaattggtg ctatggctaa

75241 aagtgtgcgc tgatgagctt tattttgaaa tggagatata atctctaaac attggtcaaa