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Information of Podaspora anserina cox1.I1 intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

3' end

                                     g tgcgccgttt aacgtgcgtt ttaagtccgg 

38701 ggaattagac cctataagct actgttgttg cttattaaac ctactgactt atctcatgac 

38761 gaaaggattg agggagtgta gcatgtcagt aaatccatat ctaacgatag ctattaaatc 

38821 agttgagagt ggagaggtaa aagcttccta tgtattaaga ttactaacta tggtaggatt 

38881 atgtgtttcc atagggatta agatagctat agccctatat tgagtattga ttaagatatc 

38941 tgcaagctta atcaaaaaca gttactcatt tactacctcg gagagaggat atatagttta 

39001 caatgctaag ggaagacgaa gacttaacgt ggggaactcg ggattgccta aggggagaaa 

39061 ttcctatggt aacggatccg tagtagtagg tgtgacatcc ggtaaatgga tacataccaa 

39121 agtacggaag tcaaaggtat ctcccaaatc tgaggctcgc aagggtcaag gatccctagg 

39181 agaaatgctt atgtacaatg agagagggca atgtatcaac gcttatgaag taatttgcaa 

39241 gcttgaagct ctttatactg cttatatgaa tattaaatct gaaccaggta acatgacacc 

39301 aagggtcgac tcagagacac tggatggaat ctctaaggaa tgatttgaaa aaatttcgga 

39361 acaactgaag agtgaacaat tccgttttag accaacgcgt agggtgtaca tacctaaagc 

39421 gaatgggaag atgagaccac taggaatcgc gtctcctaga gataaaatag ttcaagaggt 

39481 ctttagggcc atacttgaac aagttctaga accaaggttt cacagtagct cacatgggtt 

39541 cagaccaggt agaggttgtc actccgctct agcaactatt agatattgga atggtattaa 

39601 atgatttatt gaaggagata ttaaaggctt ctttgataat atagatcatc acatacttga 

39661 aaagctatta gttaaacatt ttcaggacca aagattcatt gatctttatt ggaaaatggt 

39721 taaagctggt tatgtggaat ttgataaaga taaaagctcg ataattgggg tacctcaagg 

39781 aggaattgct agtcctatac tttcaaatct agtacttaac gaacttgatg agtttgtcca 

39841 gaatattgtg gacgaattta atgagaaact taaaggtggt aaacacacaa gtaaaaaccc 

39901 tgcatatgtt gtaattgaca gtagaatagg taaaattaca agattagaaa gaaagctaaa 

39961 gagcaagggt caagagctgg attccggtag aaagttagaa agaatgaagt taatcaaggt 

40021 tagagctact atgccttcca tgattcctaa tccagatcta gctaagatat actatgtaag 

40081 atatgctgat gattgactta ttggcgttgc tgggtcatct gaaacagcaa gagcaataaa 

40141 ggagagaata gctgcttact taaaagatat attaaagttg gaattatcca tggagaaaac 

40201 tctaataact aatgcttccg aagataaggc ttacttctta ggtactgaga ttcagagaat 

40261 atcaagtgta aagggtgaga ttaaaagatt taagaatata aaaggtcatc ctcaaagaat 

40321 acctactact tccacagtaa tgaatgcacc aatcagtaaa ctggtaacaa agttagctga 

40381 caaaggtatt gttatttgga agtccaaggc tcttaatgaa gataacttaa tacctcaacc 

40441 catattaaaa tgggtaaatc taccaataag agatattata cttagatata agatgatctg 

40501 aaatggttat attaattact attccttcgc tgataataaa ccaagattag tacttatcta 

40561 ctgaatacta agaaaaagct tagccaagac tcttgcaact aaactaaaat taggaacagt 

40621 tagaaaggta tacttgaagt ttggagtcaa cttgagattt gaaatactag gtactgataa 

40681 caaaagcata gaatttacaa aaggtaatct attacctaca cctaaaaatt ttaaaggtaa 

40741 gactaatttt gtagacaatc ttaaagtagt agaatgatca ttaaggactg ttagtttttt 

40801 taactatgtc tgtgccagct gtggtgcaag tgataattta caagttcatc atgttaaaca 

40861 tattagaact atagatgtaa aacttagtgg gtttgataag cagttagctg ctataaacag 

40921 aaaacaagtt actctgtgca taagttgtca caataaggtc catactggaa aatatgatgg 

40981 gatgtcttta aaatatatga aagatataag caaacctgag ttgaatcaac aataagttta 

41041 gagaataata ttagcaataa ttaagtatct catagtaaca tttgacatta gtaatcgcat 

41101 attacctttg atggagagcc gtatgcggtg aaagtcgcac gtacggttcg gaggagagtt 

41161 tttggtttct aaggtctata tagactaagg actggctgct tatcctac

 

                                                                   

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[intron& flanking sequence]

 

Genbank entry, intron is marked as red

 

                                     t tgattgcaaa tcttaagtaa taggttcgat 

38101 tcctacataa ttttcgtgaa aaatatattt aatgtcttgg ctattacagt ttaataaaat 

38161 attaattgat gtaggaaaaa tattttatta aggcgcgagc tcgaaacaat aattgttcgt 

38221 ctgtgtatag tggttatata tatttatagt atattatatt acgaccttgt gtcgtattat 

38281 ggtatgacgc ggtggcatac gtacgaagtt attcgccatg ctcctctttg tgttatatta 

38341 taactatatt aactatatta ctataaaaaa aaatagctta tgcaagaata acaaaaaata 

38401 aagtttgtct gaaaatgatg tcgattgtct tgttgtatct caacaaaaaa ataaagtagc 

38461 attattagat gaagctaaca atttaaaaaa agacaaacta atatcaggag gggtatcatt 

38521 gtgaatcgag agatgaatgt tatctacaaa tgctaaagat atagggaatc tatatttaat 

38581 ttttgcatta ttttcgggat tactaggtac agcgttctct gtattaatta gaatggagtt 

38641 gagcgggcca agtgttcaat atattgcagg tgcgccgttt aacgtgcgtt ttaagtccgg 

38701 ggaattagac cctataagct actgttgttg cttattaaac ctactgactt atctcatgac 

38761 gaaaggattg agggagtgta gcatgtcagt aaatccatat ctaacgatag ctattaaatc 

38821 agttgagagt ggagaggtaa aagcttccta tgtattaaga ttactaacta tggtaggatt 

38881 atgtgtttcc atagggatta agatagctat agccctatat tgagtattga ttaagatatc 

38941 tgcaagctta atcaaaaaca gttactcatt tactacctcg gagagaggat atatagttta 

39001 caatgctaag ggaagacgaa gacttaacgt ggggaactcg ggattgccta aggggagaaa 

39061 ttcctatggt aacggatccg tagtagtagg tgtgacatcc ggtaaatgga tacataccaa 

39121 agtacggaag tcaaaggtat ctcccaaatc tgaggctcgc aagggtcaag gatccctagg 

39181 agaaatgctt atgtacaatg agagagggca atgtatcaac gcttatgaag taatttgcaa 

39241 gcttgaagct ctttatactg cttatatgaa tattaaatct gaaccaggta acatgacacc 

39301 aagggtcgac tcagagacac tggatggaat ctctaaggaa tgatttgaaa aaatttcgga 

39361 acaactgaag agtgaacaat tccgttttag accaacgcgt agggtgtaca tacctaaagc 

39421 gaatgggaag atgagaccac taggaatcgc gtctcctaga gataaaatag ttcaagaggt 

39481 ctttagggcc atacttgaac aagttctaga accaaggttt cacagtagct cacatgggtt 

39541 cagaccaggt agaggttgtc actccgctct agcaactatt agatattgga atggtattaa 

39601 atgatttatt gaaggagata ttaaaggctt ctttgataat atagatcatc acatacttga 

39661 aaagctatta gttaaacatt ttcaggacca aagattcatt gatctttatt ggaaaatggt 

39721 taaagctggt tatgtggaat ttgataaaga taaaagctcg ataattgggg tacctcaagg 

39781 aggaattgct agtcctatac tttcaaatct agtacttaac gaacttgatg agtttgtcca 

39841 gaatattgtg gacgaattta atgagaaact taaaggtggt aaacacacaa gtaaaaaccc 

39901 tgcatatgtt gtaattgaca gtagaatagg taaaattaca agattagaaa gaaagctaaa 

39961 gagcaagggt caagagctgg attccggtag aaagttagaa agaatgaagt taatcaaggt 

40021 tagagctact atgccttcca tgattcctaa tccagatcta gctaagatat actatgtaag 

40081 atatgctgat gattgactta ttggcgttgc tgggtcatct gaaacagcaa gagcaataaa 

40141 ggagagaata gctgcttact taaaagatat attaaagttg gaattatcca tggagaaaac 

40201 tctaataact aatgcttccg aagataaggc ttacttctta ggtactgaga ttcagagaat 

40261 atcaagtgta aagggtgaga ttaaaagatt taagaatata aaaggtcatc ctcaaagaat 

40321 acctactact tccacagtaa tgaatgcacc aatcagtaaa ctggtaacaa agttagctga 

40381 caaaggtatt gttatttgga agtccaaggc tcttaatgaa gataacttaa tacctcaacc 

40441 catattaaaa tgggtaaatc taccaataag agatattata cttagatata agatgatctg 

40501 aaatggttat attaattact attccttcgc tgataataaa ccaagattag tacttatcta 

40561 ctgaatacta agaaaaagct tagccaagac tcttgcaact aaactaaaat taggaacagt 

40621 tagaaaggta tacttgaagt ttggagtcaa cttgagattt gaaatactag gtactgataa 

40681 caaaagcata gaatttacaa aaggtaatct attacctaca cctaaaaatt ttaaaggtaa 

40741 gactaatttt gtagacaatc ttaaagtagt agaatgatca ttaaggactg ttagtttttt 

40801 taactatgtc tgtgccagct gtggtgcaag tgataattta caagttcatc atgttaaaca 

40861 tattagaact atagatgtaa aacttagtgg gtttgataag cagttagctg ctataaacag 

40921 aaaacaagtt actctgtgca taagttgtca caataaggtc catactggaa aatatgatgg 

40981 gatgtcttta aaatatatga aagatataag caaacctgag ttgaatcaac aataagttta 

41041 gagaataata ttagcaataa ttaagtatct catagtaaca tttgacatta gtaatcgcat 

41101 attacctttg atggagagcc gtatgcggtg aaagtcgcac gtacggttcg gaggagagtt 

41161 tttggtttct aaggtctata tagactaagg actggctgct tatcctacat aaccaattat 

41221 ataatagcat cattacagcg catgccttac tgatgatttt ctttatggtt atgccagctt 

41281 taatcggtgg ttttggtaag aataaaattc aaagttttac tacattagta tcttcaaagg 

41341 ataaaaataa tttaaattcc ttacgagata aattgggccc ttatctagct ggattagttg 

41401 aggctgacgg ttcatttgct gttcacgata taaattcaaa agctaagaaa tattcaccta 

41461 aattaataat agtttttagt ttaagtgata aacctttagc tgaaaaacta acatctatta 

41521 ctcaagtagg taaaatatac aatagagaaa gtcaaggttg tgtattatga agtattcaaa 

41581 atagtgaaga tgtattaaaa ataatccata ttataaatgg ttatatgcgt acacctaaaa 

41641 tagaagcatt acatcgtaca atactttgat ttaacgttaa taggaatacg gatattaaac 

41701 ctttagat                                                                

 

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[ORF sequence]

 

787 a.a.

 

APFNVRFKSGELDPISYCCCLLNLLTYLMTKGLRECSMSVNPYLTIAIKSVESGEVKA

SYVLRLLTMVGLCVSIGIKIAIALYWVLIKISASLIKNSYSFTTSERGYIVYNAKGRR

RLNVGNSGLPKGRNSYGNGSVVVGVTSGKWIHTKVRKSKVSPKSEARKGQGSLGEMLM

YNERGQCINAYEVICKLEALYTAYMNIKSEPGNMTPRVDSETLDGISKEWFEKISEQL

KSEQFRFRPTRRVYIPKANGKMRPLGIASPRDKIVQEVFRAILEQVLEPRFHSSSHGF

RPGRGCHSALATIRYWNGIKWFIEGDIKGFFDNIDHHILEKLLVKHFQDQRFIDLYWK

MVKAGYVEFDKDKSSIIGVPQGGIASPILSNLVLNELDEFVQNIVDEFNEKLKGGKHT

SKNPAYVVIDSRIGKITRLERKLKSKGQELDSGRKLERMKLIKVRATMPSMIPNPDLA

KIYYVRYADDWLIGVAGSSETARAIKERIAAYLKDILKLELSMEKTLITNASEDKAYF

LGTEIQRISSVKGEIKRFKNIKGHPQRIPTTSTVMNAPISKLVTKLADKGIVIWKSKA

LNEDNLIPQPILKWVNLPIRDIILRYKMIWNGYINYYSFADNKPRLVLIYWILRKSLA

KTLATKLKLGTVRKVYLKFGVNLRFEILGTDNKSIEFTKGNLLPTPKNFKGKTNFVDN

LKVVEWSLRTVSFFNYVCASCGASDNLQVHHVKHIRTIDVKLSGFDKQLAAINRKQVT

LCISCHNKVHTGKYDGMSLKYMKDISKPELNQQ

 

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[secondary structure]

 

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