Podaspora anserina cox1.I1

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Information of Podaspora anserina cox1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

g tgcgccgttt aacgtgcgtt ttaagtccgg

38701 ggaattagac cctataagct actgttgttg cttattaaac ctactgactt atctcatgac

38761 gaaaggattg agggagtgta gcatgtcagt aaatccatat ctaacgatag ctattaaatc

38821 agttgagagt ggagaggtaa aagcttccta tgtattaaga ttactaacta tggtaggatt

38881 atgtgtttcc atagggatta agatagctat agccctatat tgagtattga ttaagatatc

38941 tgcaagctta atcaaaaaca gttactcatt tactacctcg gagagaggat atatagttta

39001 caatgctaag ggaagacgaa gacttaacgt ggggaactcg ggattgccta aggggagaaa

39061 ttcctatggt aacggatccg tagtagtagg tgtgacatcc ggtaaatgga tacataccaa

39121 agtacggaag tcaaaggtat ctcccaaatc tgaggctcgc aagggtcaag gatccctagg

39181 agaaatgctt atgtacaatg agagagggca atgtatcaac gcttatgaag taatttgcaa

39241 gcttgaagct ctttatactg cttatatgaa tattaaatct gaaccaggta acatgacacc

39301 aagggtcgac tcagagacac tggatggaat ctctaaggaa tgatttgaaa aaatttcgga

39361 acaactgaag agtgaacaat tccgttttag accaacgcgt agggtgtaca tacctaaagc

39421 gaatgggaag atgagaccac taggaatcgc gtctcctaga gataaaatag ttcaagaggt

39481 ctttagggcc atacttgaac aagttctaga accaaggttt cacagtagct cacatgggtt

39541 cagaccaggt agaggttgtc actccgctct agcaactatt agatattgga atggtattaa

39601 atgatttatt gaaggagata ttaaaggctt ctttgataat atagatcatc acatacttga

39661 aaagctatta gttaaacatt ttcaggacca aagattcatt gatctttatt ggaaaatggt

39721 taaagctggt tatgtggaat ttgataaaga taaaagctcg ataattgggg tacctcaagg

39781 aggaattgct agtcctatac tttcaaatct agtacttaac gaacttgatg agtttgtcca

39841 gaatattgtg gacgaattta atgagaaact taaaggtggt aaacacacaa gtaaaaaccc

39901 tgcatatgtt gtaattgaca gtagaatagg taaaattaca agattagaaa gaaagctaaa

39961 gagcaagggt caagagctgg attccggtag aaagttagaa agaatgaagt taatcaaggt

40021 tagagctact atgccttcca tgattcctaa tccagatcta gctaagatat actatgtaag

40081 atatgctgat gattgactta ttggcgttgc tgggtcatct gaaacagcaa gagcaataaa

40141 ggagagaata gctgcttact taaaagatat attaaagttg gaattatcca tggagaaaac

40201 tctaataact aatgcttccg aagataaggc ttacttctta ggtactgaga ttcagagaat

40261 atcaagtgta aagggtgaga ttaaaagatt taagaatata aaaggtcatc ctcaaagaat

40321 acctactact tccacagtaa tgaatgcacc aatcagtaaa ctggtaacaa agttagctga

40381 caaaggtatt gttatttgga agtccaaggc tcttaatgaa gataacttaa tacctcaacc

40441 catattaaaa tgggtaaatc taccaataag agatattata cttagatata agatgatctg

40501 aaatggttat attaattact attccttcgc tgataataaa ccaagattag tacttatcta

40561 ctgaatacta agaaaaagct tagccaagac tcttgcaact aaactaaaat taggaacagt

40621 tagaaaggta tacttgaagt ttggagtcaa cttgagattt gaaatactag gtactgataa

40681 caaaagcata gaatttacaa aaggtaatct attacctaca cctaaaaatt ttaaaggtaa

40741 gactaatttt gtagacaatc ttaaagtagt agaatgatca ttaaggactg ttagtttttt

40801 taactatgtc tgtgccagct gtggtgcaag tgataattta caagttcatc atgttaaaca

40861 tattagaact atagatgtaa aacttagtgg gtttgataag cagttagctg ctataaacag

40921 aaaacaagtt actctgtgca taagttgtca caataaggtc catactggaa aatatgatgg

40981 gatgtcttta aaatatatga aagatataag caaacctgag ttgaatcaac aataagttta

41041 gagaataata ttagcaataa ttaagtatct catagtaaca tttgacatta gtaatcgcat

41101 attacctttg atggagagcc gtatgcggtg aaagtcgcac gtacggttcg gaggagagtt

41161 tttggtttct aaggtctata tagactaagg actggctgct tatcctac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

t tgattgcaaa tcttaagtaa taggttcgat

38101 tcctacataa ttttcgtgaa aaatatattt aatgtcttgg ctattacagt ttaataaaat

38161 attaattgat gtaggaaaaa tattttatta aggcgcgagc tcgaaacaat aattgttcgt

38221 ctgtgtatag tggttatata tatttatagt atattatatt acgaccttgt gtcgtattat

38281 ggtatgacgc ggtggcatac gtacgaagtt attcgccatg ctcctctttg tgttatatta

38341 taactatatt aactatatta ctataaaaaa aaatagctta tgcaagaata acaaaaaata

38401 aagtttgtct gaaaatgatg tcgattgtct tgttgtatct caacaaaaaa ataaagtagc

38461 attattagat gaagctaaca atttaaaaaa agacaaacta atatcaggag gggtatcatt

38521 gtgaatcgag agatgaatgt tatctacaaa tgctaaagat atagggaatc tatatttaat

38581 ttttgcatta ttttcgggat tactaggtac agcgttctct gtattaatta gaatggagtt

38641 gagcgggcca agtgttcaat atattgcagg tgcgccgttt aacgtgcgtt ttaagtccgg