Pylaiella littoralis LSU.I2

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Information of Pylaiella littoralis LSU.I2 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgacaa gaagttcagg aagggattga

4081 ggtgaaagtc ctcctcccga atcgttcatg ggagagtcta tccagacttg cgtagcgagt

4141 aatcgctagg tgagaagctc tggagacaat gtacctgccc ttcaattgga ggtgccaggg

4201 ctaggctttg ttcctatggc tagcgaaagc gaatacaggt tattaggcgt cgtgaaaaca

4261 aaactcttta tttatagaga ggctcgtaga tgagttaccc tcctttttat ggggtaactg

4321 aacgatcaat atctaccggc gtagactgtg agcctaaagg aaacgaatga aagtgtccct

4381 tcctgggaac ttggtaagcc caatagactc ccttgtggag gagtaagagc aatcttactt

4441 atcgtctagt gggtaaaaga cataatagga agcaaatgct tggttgtaac gatcgagata

4501 gaatctgttg atttaagctg aaaggctgca gacttattaa atgggtgttc tggcctaggt

4561 attgataata ataatattcc gagtgaagat ttgtgtaagt tttcggctta gtccattcta

4621 agtcaaaatc agaagaactt gctctaagga aatcattttg aaaacatgag tattccatat

4681 ataattcctt tcaattggca tgacatagat tgggctaacg tccagtcgaa agtctgttat

4741 tatcaaaata acctcgcagt agccgaacta aaaggtgatt ctggtttagt taccaaacta

4801 caaagaaatc tcgtaaattc ctttgctgga cgagcccttg cagtacgtgc catcacgact

4861 aacaagggta agaacacacc aggaatcaat ggggagattt gggacacatc tattaagaaa

4921 ttggatgcaa tccacaggtt agggagagta tcaaattact cttgttcccc tgtaaaaaga

4981 gtatacatac caaagtccgg tggaaaactt cgtccgctag gtatacctaa tatgtatgat

5041 cgaggattgc agtatttatg gaaattggct ctggacccaa tagctgagtg tcgggctgac

5101 cggcattcct atgggtttcg aaagggtagg agcacgcagg acgttcatac gatactgcat

5161 ttgcttctta gccccaaaag tagatgtgat tgggttttgg aagctgatat caggggcttc

5221 tttgataaca tcaaccatga ctggatcata cagaatatac caatggacaa aaatattctt

5281 cgggaatggt taaaagcagg tgctctagaa acaacaactc aggagtttca taagggtatt

5341 gctggagtac cacaaggagg accaatttca cctttaattg caaacatgac gttggatggt

5401 ttagaagttt gggtggctaa ctctgttaaa catctctata aaaagagtaa agaaactagt

5461 tggtccccga aagtaaacgt ggtaaggtat gcggatgact tcgtcgttac cgctgcaaca

5521 aaacgaatac tcgaggatat agtgaaaccg tcaattcaag atttcctggc ttctcgtggc

5581 ctagttctta atcaagagaa gacttgcatc actagcgtaa agaaaggctt cgattttgtt

5641 gggtttaact tccgggttta ccccgataag tctggtccga aaggcgcaaa atcgattgtt

5701 aaaccgacaa aagaaggcaa aagaaggctc cgatccaaga taagaaatgc tgtgaagaca

5761 aataaaagct ctggagaaat tatagtggag ttaaacccaa tccttcgagg ttgggctaat

5821 tactataagg cgacctcagc aaagaaagtc tttacatcga ttggtaaata tgtatgggat

5881 aaaacctgga catgggccaa aagaaagcat aggcaattaa atttccgtga ccttgcgaag

5941 ttatattata cacgacgcaa gaaaaggaaa tggatcttca aaggagaatg gatggacaag

6001 gaattgacta ttttcttgat agatagtgtt gcgattaggc gacattctct ggcaaggaat

6061 tacaaccctt atctgcttga caacgaagat tactttatcg agcgaaacaa aagactttcc

6121 tcatcgaacc tttggaacga gagacatagt aagttgttgc gtagggataa gtataaatgt

6181 aaagtatgta acgaatacat ttgtggtgag gataaagttg aaattcatca catcaaacct

6241 aaaagtttag gtggtgatga tgctatatcc aataacgtgg ttttacacgc ggagtgtcat

6301 aaacagctga cacacactaa atcaagaagc cttttggctc gatttgaaag aggcaagatc

6361 ttgaacattt aattatgttt agtgaatctt tttctctaac gaaaagcaga atgcgtgagc

6421 cgtgtgcgat gaaagtcgca agcacggttc tgatgggggg aaaacgagag atcgtctacc

6481 tatccaact

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

tatttgtgg tagcagaacc ttccgtagtc ataaaagttt tattgtaaag

3601 taaaatgaag atatcggagg tgagaatact tgcatgagta gcataaaaca atgaaattaa

3661 agcattgtgg gccgtaagtc caaggtttcg atcctaagta aagctaggtc gtgagaggta

3721 aaaacctcaa attaaaacgg tccctaagct gtcccggaag gcctccagta atgggcaaga

3781 ttacgaataa tctgttaaga gttgctgacg aaaaattcac tttattcttg agactgtcaa

3841 gggtgattta ttttttccaa gaaaaaggca ctctatatga accgtacctt aaacaccaca

3901 ggtggacagg tggagtacac taaggccttg agataaccct gttgaaggaa ctcggcaaaa

3961 tgactctgta acttcggaat aaggggtaaa gttattagcg taagctttta tctttgacac

4021 aaaatcgggg gtggcgactg tttattaaaa agtgcgacaa gaagttcagg aagggattga