Pylaiella littoralis cox1.I1

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Information of Pylaiella littoralis cox1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtg cgccattgag ctctttctca

841 cgttagttat gttaataact aggctgattt atccattagg tcttaaagca ttttccccta

901 cgcctgccag aaatggtctg cgtagaagcg ggataaaaag tcaattgagg ggacctgtta

961 accccgataa ggtttggcaa gctacaatta ctatgattag gtttacaaag ttgatacgag

1021 acctcggcct cacactgggc ggtggacgca acataacagg taagggtcca tctttaatgt

1081 gggttccttc cagaatgtat gggagcccta ggataaatat taaacgattc tgctatatgg

1141 cagctaacaa aatctcgcaa cgatctaagg taattaacga cgtggtattg ggaactatgg

1201 gaaactctaa cagacgaaag tctcatgggt tcggaggtct cgtagtagag tgttgttctt

1261 taagcactcg aaggggacca ggaattcaac acttccattc aggtaggggc attaactcta

1321 aggagggcgc tcctcaaagt aatggaatag atatcacaaa tgatagatta actaaggtta

1381 ttcacgatat cgcatcttta aaaaatataa ctagagctta cgagtctatt aaaagtaagc

1441 ctgggaacat gactccgtca gctaactcgg aaaccttgga cggtttcggg ttagcctggg

1501 tagttaaagc ttcaaacaac ttaaaggccg gaaaattcaa gtttagcaat gctagacggg

1561 tccatattcc aaagccaggc agttcgaagc tgagaccact tggagtagtc agtcctagag

1621 acaaagttat cctgactgca gtcctacagg tcctggaacc tttttacgaa aagaagttcc

1681 tggacatttc acacgctttc cgccccggca gaggttgtca tacagcgctg aattttattc

1741 agttacgttt tggcaattct aattgggcta tagagggaga catagcaaga tgttttgacg

1801 atatcgatca tgacatcttg ttgggaatcc tcagaagaga tattaaatgt gataaaacta

1861 tagcgctaat aaagaagtcc cttaaaaatc catttgtgga agacggggta acagtcaaac

1921 ctcagaaggg tactttccaa ggaagccctc ttagtccctt tttatgtaac atttaccttc

1981 acgaaatgga cttgttcatc aaaggtctca gcgaagacta tatttcgggg actcatagac

2041 ggaaatctcc tcagtatcgt aagatacagt atgagctctc caaaccttct ttaaaggtaa

2101 ccgaaaggaa acttttgaat aagaaactac gagcgatccc aagtaaagat ccagtagacc

2161 cagattttcg caggttttct tatgtacgtt atgctgacga ctttgttatc ggaataacgg

2221 gtcccaagaa agattgtgag gaggtgcgta ataaattaag ggaatttttg acaaaaatct

2281 tagccctgga gctaagtatg gataaaacaa tcatatcgca tttcaaccaa gaaggaatta

2341 cctttctagg tacccgcata agtgggaata aagaaaggga aaaagtaatt cgaaaaatct

2401 ctaaaaatgg taagatcctt aaggttcgca ccacgtctag ggccagatta gaagctccta

2461 tcgaggtttt actcgagaga ggaatggcaa atgggcactt caagaggctc tcaaatggca

2521 agattgtacc aacggctctt agaagagtgg ttaacttaga tcactctgat atccttaggt

2581 tctacaatca gaaaattaga ggaatcctga actactattc ttttgcggat aacgcgaaaa

2641 gcctaggggt gattgttcac ggtatgaaac actcgtgtgc tttaactctt ggcctgaaat

2701 taaaattgag ggtgagagca aaagtattca aaaaattcgg caagtaccta gagtgcaaag

2761 agtctggtac taaactgttt ataccaaatt cattttcgcg acaaagaaat tctacattaa

2821 tccgccaacc tttcggagca gtccttgacg cgatatggaa caataaattg tcgcgtagca

2881 gtttaaatat ggggtgtctt gtttgtgggg aaaccccaag cgaaatgcac catgttagga

2941 agattaaaga tttaaaatct cgttatgata gtggcggtat tgcattctgg actcttcaaa

3001 tggctgctat aaaccgcaag caaatcccat tatgtaagat acatcatttg gccttacatc

3061 gtggcactct tacccactcg gaaagagaat tgcttaagga ggcaattaga aatacaaaat

3121 agccgtctag tatatatata tttttttaaa ttggattctg gaaagccgta tgaggggaaa

3181 ctttcacgta cggtttggag gaaagtcggg aagctctaag gtatttgcta tgaactctcg

3241 gctcatccta c

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

taa ttggtttgtg cctttaatga ttggcgcacc tgatatggct

361 ttccctcgta tgaataacat aagtttttgg ttgttgcctc cctctttaat tcttctttta

421 gcctcgtctt tagtagaatc cggtgccggt acaggatgga cagtttatcc ccctctcagc

481 ggtattcaag ctcactcagg cccttcggtt gacttagcta tatttagtct tcacttatca

541 ggtgcagctt ctatcttggg ggcaataaat tttattacta ctatttttaa catgcgtgct

601 cctggtatga ccatggatag attacctctt tttgtttggt ctgttttaat cacagctttt

661 ctattgttgt tgtcgcttcc tgtattggcg ggcggtatta caatgttgtt aactgatcgt

721 aatttcaata ctacgttctt tgatcctgct ggtggtggcg atcctgtgtt ataccaacat

781 ttattttggt tcttcggtca tcctgaagtg tatatttgtg cgccattgag ctctttctca