Porphyra pupurea LSU.I2

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gt gcgattcgtt

4801 gctagtaaga gaagaaatgt acttctcgta aatagctaat ctaaactttt aaagattaaa

4861 ctaatattac aggtaggaag ccagttttat tttagaacta gtgggcctac gcattactcc

4921 taatgctgat caatgagctg ttttacaaac agtgaaccct atgcaatatg agaatagtta

4981 ctcatatggt ataagcaggg cataaattta ggtggatgtt acttataaac actttaacct

5041 aaaaagaata tacaaatcag taaatctgac aagagaagca gttatagaag tgtaacctac

5101 cacatcggta gccgtaataa aattcccaaa atatgtcata gcgggggata attataagta

5161 aaaccacccc gttaacacga aatagcgtga attctaaact caaggtaaaa tttaatgtgg

5221 ccgcgttaga caggagtacc ggttttagag ggaaaagagg tgcttactga ctgtatgtat

5281 gtaatattgg aacgaagtaa atattgacaa aaaccttgcg ggtttccgta aggacgtttt

5341 tctataatgt taaggtttgt taatatcagg attttacaag aagccaacgc catttggaaa

5401 gctcatggat atgctgacgt gtagacaaaa ttatctaaat aaaagtttta acactgttaa

5461 gcttacaaca acaaacaaat tatgcaaaag tgaacgcaag ttaactgaaa gctaaaagaa

5521 atttgactgt atagattaca gtgtaaaatt ttcaaattca gtaaagaagg tgatatgaat

5581 tctgtatttt tgatacagaa acaaatcata aaacatgact tttcaaagtt tttggctgtt

5641 cgaaaagtga ctcaagacaa cttgggaaaa cgaacagctg gagtagatag aattagtaac

5701 ttaactccag acgaaagaat ggaactagta caaaatattc aaattgataa taaatcggat

5761 aaaattcgta gagtaacaat tttaaaaccg aatggaaaag agaggcactt aggcatacct

5821 accataagag atcgcgctaa acaatgcctt gtaaagtttg cattagaacc tcaatacgaa

5881 gcgatatttg agcctaacag ctatgggttt cgcccggggc gaagctctaa tgatgctaga

5941 caggcaattg tgaaatgttt acagcaactt cctaaacacg tattagatgc agatattgaa

6001 agatgcttcg ataatattga tcactctaaa ttaatccacg ggataaacac gttccctctt

6061 ttaagagagc aggtgagagc ttgattaaaa gcgtgtatac ttacaggttt caaagaaaat

6121 ataaaagaag tcatcccaga agctggaact ccacaaggag ggattatttc tcccttgttg

6181 gcaaatattg ctctacatgg aatggaaaaa gcagtatgta aaagcggagt ataccttatt

6241 agatacgcag atgatttttt aatattatgt aatgaagaga aggaattgtc cgaagcaaag

6301 aataagatcg aaattttctt acaaaattta gggctaaagt tgtcagaatc aaaaacgaaa

6361 ataacataca ccggaagctc tgagtattct agaactaaag gggtagattt cttaggtttt

6421 aattttgtta actataaggt aggtaaacac acatccgcaa agaataatca aggaattgcg

6481 actggatgaa aaagcaggtg ccaacctagc tataaatcta tcgaatctca tttggataat

6541 atcaaagata ttactaagaa gtccaccgga ttatctcaaa aagttttaat cagtaaacta

6601 gcaccagtta ttagcggatg aactaagtat ttctccgtat gtagtgcaac aaaaacgttt

6661 agttattgta gtgtacgtac gttttatctt cttaggaaat gagctaagaa acgtaaacga

6721 ataggtgcag gtatcacccg atactgaata tctataggaa gcgcagaaag agtctttggg

6781 cttaaagaag gagacaaaat tataaaatta acccatcacg atcaacgaaa tattattcta

6841 tctacaaaaa tagccggaca gagcagccca tatgatggaa gggttactta ctgagctaaa

6901 cgcctatccg ttaataataa gtatgggcaa cttcttaaaa gactattaaa aactaagggg

6961 ccgcagtgcg atatgtgtaa tttatatttt atagattctg atagaataga aatagatcat

7021 attataccaa gaagtcatgg gggaacttca gattgaaaaa acctaagact tatgcacggt

7081 cattgtcacg atattagaca ttccaaagca gttaatactt aaattgtaga ctaatataga

7141 cacttctata ctaaaaaaga aagccaaaaa ctttcaatag ataactttga ggagccgtat

7201 gaagggtgac cttcacgtac ggttttgcag tgggaggaaa cttcgtgaga agtttcttta

7261 ccataac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

gg tagtccgtat gatggtaaag ttacatactg

4321 gtctaaaaga ttatcatcaa gtaataagta cggatctctc ttaaggacac ttttaaaaat

4381 gaaaggacca aaatgtgata tgtgcaggat ttattttaac gattccgata gaatagagat

4441 agaccatatt acaccaagaa atcaaggagg aacctcacac tgagataatc taagattact

4501 gcatggacat tgtcatgaca cgcgtcattc caaaaatgat taacgagatt attttgtgtc

4561 aagataacaa ttttacttaa caacaaattg atgttgataa tatgacttga ggagccgtat

4621 gaagggtgac tttcacgtac ggttttgaag tggaaggtat tctcgtgaga gaagacttga

4681 ccataacctc atcttttcct ggagctgaaa taggttccaa gggtatggtt gttcgccaaa

4741 taataagata cgtgagctgg gttcagaacg tcgtgagaca gttcggtcgt gcgattcgtt