Pavlova purpurea cox1.I1

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgcttg tgaaagctaa taattttata atcttacggt tatgggttaa

721 tagtcaatga ctcatcgtag tcaataaacc ctttcaagta cccactcact ttagcgcgaa

781 gagtgcgaga ggaccatagc atgtgggctt gagtttctag atatacactt tgtacacttt

841 gctcggacat ataggaccga cccaaatctg gggaacgtac gaacgagcgg atcgaaccat

901 tccgcgagtg aagactatag taggttagca taactcgaag agagtagaaa atgtgataca

961 gagtcgccaa atatcttctt gcagagacat atacgacaat tccctctgcc tgatacctgc

1021 cggtgtgaac gccaattatt agaactcaag caaggcctca atgtccctat taagtttgga

1081 cgagtcaagt ttaatttgac aaaaggcctg agatctagga gagtaattag cgatgcagtg

1141 aaagagacat tgtttttcgt ctcaataaag taacataaag gtcgttgatg aaccctagta

1201 gtaagtgttt tttgttctta tcttcccccg ttatcctagc ggttttgtaa ggtttgaata

1261 gtggctattc ccaagtcaca agctaatgat gtaagattca tatccggctt tttgccctgt

1321 atcattaatt ttgttaaaaa atatgcaaaa catcaatcgc tatttctcaa atatttcttc

1381 cgttgaagat aaaaggaaga aggctgtcga tgaagcgtct gtagcttctg ttcccgctgt

1441 ctttgtaccc ctatctcagg aaagttcaga taattttatt ggaaatccta tatcttacac

1501 tgagatctac gatctccaga gcctgagact tggtctcgag gctactaagt ctagtgctgc

1561 accggggctt gacggtgaca gaaaggctaa tttctctgag gctaaattag ttgccctcca

1621 agctgaactc atctcacaaa agtaccaacc taaaactacg aaacgggtgg caatcccaaa

1681 acccaatggc ggtatccgct atctagggat ctcttcccaa agagataaga ttgtccaagc

1741 gtctatccaa aatgcgcttc aatcaaagta tggtaaacat tttagtccag attcgtttgg

1801 gtttagacct ggattagggt gccacgacgc tttgaaacac gttagaaata cttggcaaaa

1861 cattacttgg atcattagta tcgacattga aaagtgtttt gacactataa accacacgat

1921 tctattacaa atacttagac cgttggttga tcagccaact ctagaactta tttctaagct

1981 tattaaggtg ggctacgttg agatgtttga tactacatgt ttcccaattt ctgagtccac

2041 aattggtact ccccaaggtt ccctgatttc cccccttctt tgcaattttt atatgcacat

2101 tctagatact tttctccaga aagtccttat accacaatgg aatgtaggtg acgaaagatc

2161 ctatgtaaaa ggctgccaga accgcaaggc tatggacgtt aatgataagg ctattgtcga

2221 ggcctaccca gaactggaag gacaaattca gcgtatcaaa cacaacagat gggttacgga

2281 aggtaagggt tcacgggacc cgaatgatgc aaacttcaga cgtcttcgat atgtccgtta

2341 tgccgatgat atagtgatcg gttttacagg tccttactca gaggctcttg tgatacttga

2401 ccaggtcgta aaatttttgg aaaaaacatt atgctttaag gttaacaaag aaaagtcgtc

2461 tattaatcat tcggaaacaa acggaattaa atttttggga acttttatta aatacttacc

2521 taataaaata gttatagacc caaaacatga tattcctgga gaaatccagc aattaaaagc

2581 agttgcaatc aacaaaccgc aattacgtgc tccaatcaaa gatattcttg aaagagcagt

2641 ctcaaatggg tttgcaaaac tcagagacga cggatcaatc cgtgccacgt cttgccgtaa

2701 actatccagc ttggaggata aagcgattgt cttacgcttt tctagtatta ttcgtggtat

2761 actaaactat tatagcttcg tgaactcaag aagcgactta tggcctgtag tctcactttt

2821 tagaaaatca tgtgctttaa cccttgcgga taagcataaa ctgaaaaccg cggctgccgt

2881 ctataagcga tatggtccta acctaaaagt tcaaggtcct gtccctaagg actttgttat

2941 actacactac cctgacacac ttaaaactac tcagactttc aaactgggta aaagaagtcc

3001 aactttggcg ttcatcgatg acctcggttc gcttagtggc tcataccgat cacttccaaa

3061 aactagtgat cagtgtcaat ttccggggtg cggtgcaaag gaagggcttg aagaacatca

3121 cgtcaaccct caagccaata tatccaataa actttccgcg tttgagaaat ctttgattgc

3181 taaaaaacgc aaaacaatca ctctatgtcg ggcacatcat ctggatttac atcggaaaaa

3241 cgtgactgaa tagagaaacg tggaattaaa gctatttgcg tgataaatgt tttctaacat

3301 tgcacttagg acgagtcgtg tgctggatgg catctagcag gcacgattct gagacggggt

3361 taactcctat gtctat

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

atgccaagc

181 cttattggtg gttttggtaa ttggatggtt cctataatga ttggcgcacc ggacatggcg

241 tttccacgat taaataatat ttcgttttgg cttttgcctc cggctttact gttacttttc

301 gcttcttcgc tggttgaagt cggtgctgga accggctgga cagtctatcc tcctcttagt

361 ggtatacaag cccattctgg tggttccgtt gatcttgcaa ttttttcact tcacgtcgcg

421 ggtatttcat caattttagg cgctattaat tttataacta ctattttcaa catgcgagca

481 cctggtatga ctgcgcaccg tttaggtctt tttccatggg cagttttaat aacagctttc

541 ctattacttt tatctttacc tgttcttgct ggtgctatca caatgcttct tgtagaccgt

601 aactttaaca ctacattttt tgaccctgct ggaggtggtg atcctttatt gtaccaacat

661 cttttttggt tgtgcgcttg tgaaagctaa taattttata atcttacggt tatgggttaa