Schizosaccharomyces pombe EF2 cob1.I1

[Back to mitochondrial introns by organism] [Back to home page]

Information of Schizosaccharomyces pombe EF2 cob1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

ttgc

10861 gccgttgtgg tatatatgtg taccctcata gagaaaggga tatcttgtgt gtaaagatat

10921 gaacaataca cttaggtagc tggggaaacc caatgccgaa cagagcatgt gtacagaagg

10981 tccttcctgt aacgaaacag ataagttcag atggatcagt tcaaatagat acggttagag

11041 ctgtattgcc cgaattccaa ttcccatctc accctcagat aggtgattgt cttagctgaa

11101 tagagacatt cttctctaga tctttggttg gcttttatga ccaaggatac acaccaggag

11161 aagagagttg taccaatagt acaattaagg gaatgagtgg aaaacctacg tctatcatct

11221 caaacatata tacaactacg ggtcccgcta aggtcagtaa tgactatgcg gtcagagatc

11281 ctggagtagc tgttgatcat tttgatcaat acggtccttt gaaagaggga agaagtttga

11341 actctgcaaa gatttcaaca cagtgaagtg gatcagctac attaaagtct tccaatagat

11401 caatatttaa tattggttta ggatacatta atactttttt aggggtatct aatgtaagag

11461 gatttagtac aggatcagga cgatcaaaaa atgtactaaa taaactagac gatttatcta

11521 aacgatcaaa aaattatcct aatcttgtaa ttgatagaaa tctctacaaa gatttcctat

11581 taaatcgaga tatgttcctt attgcttata ataaattaaa atctaatcct ggtatgatga

11641 ctcatggtct taaaccggat actttagatg gaatgtctat agatgttatt gataaaatta

11701 tccaaagcct taaatctgaa gaatttaact tcactcctgg tagacgtatc ttaattgata

11761 aagccagtgg tggaaaaaga ccattaacaa ttggtagtcc tcgagacaaa ttagttcaag

11821 aaattcttag aatagtcctt gaggctatct atgaaccatt atttaatact gcttctcatg

11881 gatttagacc aggtcgaagt tgtcattctg ctcttagatc tattttcact aattttaaag

11941 gttgtacttg gtggattgaa ggagatatta aagcttgttt tgattctatc cctcatgata

12001 aattaattgc tctattatct tctaaaatta aagatcaacg atttattcaa ttaattcgta

12061 aagctttaaa tgctggatat ctaactgaaa atagatataa atacgatatt gttggaactc

12121 ctcaaggttc tatagttagt cctatcttag caaatatcta ccttcatcaa ttggatgaat

12181 ttattgaaaa cctaaaatca gaatttgatt acaaaggtcc aatagctcgt aaaagaactt

12241 ctgaatctag acatcttcat tatctaatgg caaaagccaa aagagaaaat gctgattcaa

12301 aaacaattag aaaaatagcg attgaaatgc gtaatgttcc taataagata catggtattc

12361 aatctaataa actaatgtat gttcgatacg ctgatgattg gatagttgca gttaatggaa

12421 gttatactca aactaaagag attttagcta aaattacctg tttctgttca tcaattggac

12481 taacagtatc tccaactaag actaaaataa ctaattcata tacggataaa atacttttcc

12541 ttggtactaa tattagccat tctaaaaatg ttacctttag tagacatttt ggtatacttc

12601 aaagaaattc tgggtttatt ttactttctg ctcctatgga tcgaattgca aaaaaactta

12661 gagaaactgg acttatgctt aatcataaag gtagatctgt tattagatgg ttacctcttg

12721 atgtacgaca aattattggt ttagcgaatt ctattattag aggttacgat aattattatt

12781 cttttgttca taatagagga agatttgcta cttacgttta cttcataatt aaagactgtg

12841 ttcttcgaac attagctcat aaattatcat taggtactag aatgaaagta attaaaaaat

12901 ttggtcctga cctttctatc tatgattaca actctagaga tgaaaataat aaaccaaaat

12961 taattaccca attatttaaa ccttcttgga aagttaatgt ttggggattt aaatctgaca

13021 aagttaaatt gaacattaga acactttatg cttctcactt atcaatggct aacttagaaa

13081 atctacagtg tgctgcttgt caaagtactt ataaagtgga aatgcatcat gttagacaga

13141 tgaaaaatct taaaccaatc aaaggtactt tagattactt aatggcaaaa gcaaacagaa

13201 aacaaattcc attatgtaga tcttgtcaca tgaaacttca tgctaataag ttaactctta

13261 atgaggataa aaaagtttag atatcttaaa tgtagtggag agccgtataa ttacgaaagt

13321 atcccgtacg gttcggtgac gagccgtgtc aaccctgcaa agggaatgcg tcttagttca

13381 at

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

tcct ttcagttgaa agaattgtta

10381 gagatgtaaa ttatggtttc ttattaagag ctttccatgc aaatggtgct agtttcttct

10441 ttatcttctt atacttacac ataggtagag gtttatatta tggttcttat aaatatccaa

10501 gaacaatgac atggaatatt ggtgttatta tcttcttatt aactattatt actgcctttt

10561 taggttactg tttaccagct aatcaaatgt cattctgggg tgcaactgtt attactaatt

10621 tattatcagc tgttcctttc attggtgatg atttagttca tctattatgg ggtggattta

10681 gtgtatctaa tcctacttta aatagattct tctcacttca ctatttaatg ccttttgtta

10741 ttgctgcttt atcagtaatg catttaattg ctctacatac taatggttca tcaaatccat

10801 taggtgtaac agctaatatg gacagaatcc caatgaaccc gtattatctg ataaaattgc