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Information of Schizosaccharomyces pombe EF2 cob1.I1 intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

3' end

                                                                   ttgc 

10861 gccgttgtgg tatatatgtg taccctcata gagaaaggga tatcttgtgt gtaaagatat 

10921 gaacaataca cttaggtagc tggggaaacc caatgccgaa cagagcatgt gtacagaagg 

10981 tccttcctgt aacgaaacag ataagttcag atggatcagt tcaaatagat acggttagag 

11041 ctgtattgcc cgaattccaa ttcccatctc accctcagat aggtgattgt cttagctgaa 

11101 tagagacatt cttctctaga tctttggttg gcttttatga ccaaggatac acaccaggag 

11161 aagagagttg taccaatagt acaattaagg gaatgagtgg aaaacctacg tctatcatct 

11221 caaacatata tacaactacg ggtcccgcta aggtcagtaa tgactatgcg gtcagagatc 

11281 ctggagtagc tgttgatcat tttgatcaat acggtccttt gaaagaggga agaagtttga 

11341 actctgcaaa gatttcaaca cagtgaagtg gatcagctac attaaagtct tccaatagat 

11401 caatatttaa tattggttta ggatacatta atactttttt aggggtatct aatgtaagag 

11461 gatttagtac aggatcagga cgatcaaaaa atgtactaaa taaactagac gatttatcta 

11521 aacgatcaaa aaattatcct aatcttgtaa ttgatagaaa tctctacaaa gatttcctat 

11581 taaatcgaga tatgttcctt attgcttata ataaattaaa atctaatcct ggtatgatga 

11641 ctcatggtct taaaccggat actttagatg gaatgtctat agatgttatt gataaaatta 

11701 tccaaagcct taaatctgaa gaatttaact tcactcctgg tagacgtatc ttaattgata 

11761 aagccagtgg tggaaaaaga ccattaacaa ttggtagtcc tcgagacaaa ttagttcaag 

11821 aaattcttag aatagtcctt gaggctatct atgaaccatt atttaatact gcttctcatg 

11881 gatttagacc aggtcgaagt tgtcattctg ctcttagatc tattttcact aattttaaag 

11941 gttgtacttg gtggattgaa ggagatatta aagcttgttt tgattctatc cctcatgata 

12001 aattaattgc tctattatct tctaaaatta aagatcaacg atttattcaa ttaattcgta 

12061 aagctttaaa tgctggatat ctaactgaaa atagatataa atacgatatt gttggaactc 

12121 ctcaaggttc tatagttagt cctatcttag caaatatcta ccttcatcaa ttggatgaat 

12181 ttattgaaaa cctaaaatca gaatttgatt acaaaggtcc aatagctcgt aaaagaactt 

12241 ctgaatctag acatcttcat tatctaatgg caaaagccaa aagagaaaat gctgattcaa 

12301 aaacaattag aaaaatagcg attgaaatgc gtaatgttcc taataagata catggtattc 

12361 aatctaataa actaatgtat gttcgatacg ctgatgattg gatagttgca gttaatggaa 

12421 gttatactca aactaaagag attttagcta aaattacctg tttctgttca tcaattggac 

12481 taacagtatc tccaactaag actaaaataa ctaattcata tacggataaa atacttttcc 

12541 ttggtactaa tattagccat tctaaaaatg ttacctttag tagacatttt ggtatacttc 

12601 aaagaaattc tgggtttatt ttactttctg ctcctatgga tcgaattgca aaaaaactta 

12661 gagaaactgg acttatgctt aatcataaag gtagatctgt tattagatgg ttacctcttg 

12721 atgtacgaca aattattggt ttagcgaatt ctattattag aggttacgat aattattatt 

12781 cttttgttca taatagagga agatttgcta cttacgttta cttcataatt aaagactgtg 

12841 ttcttcgaac attagctcat aaattatcat taggtactag aatgaaagta attaaaaaat 

12901 ttggtcctga cctttctatc tatgattaca actctagaga tgaaaataat aaaccaaaat 

12961 taattaccca attatttaaa ccttcttgga aagttaatgt ttggggattt aaatctgaca 

13021 aagttaaatt gaacattaga acactttatg cttctcactt atcaatggct aacttagaaa 

13081 atctacagtg tgctgcttgt caaagtactt ataaagtgga aatgcatcat gttagacaga 

13141 tgaaaaatct taaaccaatc aaaggtactt tagattactt aatggcaaaa gcaaacagaa 

13201 aacaaattcc attatgtaga tcttgtcaca tgaaacttca tgctaataag ttaactctta 

13261 atgaggataa aaaagtttag atatcttaaa tgtagtggag agccgtataa ttacgaaagt 

13321 atcccgtacg gttcggtgac gagccgtgtc aaccctgcaa agggaatgcg tcttagttca 

13381 at

 

                                                                   

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[intron& flanking sequence]

 

Genbank entry, intron is marked as red

 

                                             tcct ttcagttgaa agaattgtta 

10381 gagatgtaaa ttatggtttc ttattaagag ctttccatgc aaatggtgct agtttcttct 

10441 ttatcttctt atacttacac ataggtagag gtttatatta tggttcttat aaatatccaa 

10501 gaacaatgac atggaatatt ggtgttatta tcttcttatt aactattatt actgcctttt 

10561 taggttactg tttaccagct aatcaaatgt cattctgggg tgcaactgtt attactaatt 

10621 tattatcagc tgttcctttc attggtgatg atttagttca tctattatgg ggtggattta 

10681 gtgtatctaa tcctacttta aatagattct tctcacttca ctatttaatg ccttttgtta 

10741 ttgctgcttt atcagtaatg catttaattg ctctacatac taatggttca tcaaatccat 

10801 taggtgtaac agctaatatg gacagaatcc caatgaaccc gtattatctg ataaaattgc 

10861 gccgttgtgg tatatatgtg taccctcata gagaaaggga tatcttgtgt gtaaagatat 

10921 gaacaataca cttaggtagc tggggaaacc caatgccgaa cagagcatgt gtacagaagg 

10981 tccttcctgt aacgaaacag ataagttcag atggatcagt tcaaatagat acggttagag 

11041 ctgtattgcc cgaattccaa ttcccatctc accctcagat aggtgattgt cttagctgaa 

11101 tagagacatt cttctctaga tctttggttg gcttttatga ccaaggatac acaccaggag 

11161 aagagagttg taccaatagt acaattaagg gaatgagtgg aaaacctacg tctatcatct 

11221 caaacatata tacaactacg ggtcccgcta aggtcagtaa tgactatgcg gtcagagatc 

11281 ctggagtagc tgttgatcat tttgatcaat acggtccttt gaaagaggga agaagtttga 

11341 actctgcaaa gatttcaaca cagtgaagtg gatcagctac attaaagtct tccaatagat 

11401 caatatttaa tattggttta ggatacatta atactttttt aggggtatct aatgtaagag 

11461 gatttagtac aggatcagga cgatcaaaaa atgtactaaa taaactagac gatttatcta 

11521 aacgatcaaa aaattatcct aatcttgtaa ttgatagaaa tctctacaaa gatttcctat 

11581 taaatcgaga tatgttcctt attgcttata ataaattaaa atctaatcct ggtatgatga 

11641 ctcatggtct taaaccggat actttagatg gaatgtctat agatgttatt gataaaatta 

11701 tccaaagcct taaatctgaa gaatttaact tcactcctgg tagacgtatc ttaattgata 

11761 aagccagtgg tggaaaaaga ccattaacaa ttggtagtcc tcgagacaaa ttagttcaag 

11821 aaattcttag aatagtcctt gaggctatct atgaaccatt atttaatact gcttctcatg 

11881 gatttagacc aggtcgaagt tgtcattctg ctcttagatc tattttcact aattttaaag 

11941 gttgtacttg gtggattgaa ggagatatta aagcttgttt tgattctatc cctcatgata 

12001 aattaattgc tctattatct tctaaaatta aagatcaacg atttattcaa ttaattcgta 

12061 aagctttaaa tgctggatat ctaactgaaa atagatataa atacgatatt gttggaactc 

12121 ctcaaggttc tatagttagt cctatcttag caaatatcta ccttcatcaa ttggatgaat 

12181 ttattgaaaa cctaaaatca gaatttgatt acaaaggtcc aatagctcgt aaaagaactt 

12241 ctgaatctag acatcttcat tatctaatgg caaaagccaa aagagaaaat gctgattcaa 

12301 aaacaattag aaaaatagcg attgaaatgc gtaatgttcc taataagata catggtattc 

12361 aatctaataa actaatgtat gttcgatacg ctgatgattg gatagttgca gttaatggaa 

12421 gttatactca aactaaagag attttagcta aaattacctg tttctgttca tcaattggac 

12481 taacagtatc tccaactaag actaaaataa ctaattcata tacggataaa atacttttcc 

12541 ttggtactaa tattagccat tctaaaaatg ttacctttag tagacatttt ggtatacttc 

12601 aaagaaattc tgggtttatt ttactttctg ctcctatgga tcgaattgca aaaaaactta 

12661 gagaaactgg acttatgctt aatcataaag gtagatctgt tattagatgg ttacctcttg 

12721 atgtacgaca aattattggt ttagcgaatt ctattattag aggttacgat aattattatt 

12781 cttttgttca taatagagga agatttgcta cttacgttta cttcataatt aaagactgtg 

12841 ttcttcgaac attagctcat aaattatcat taggtactag aatgaaagta attaaaaaat 

12901 ttggtcctga cctttctatc tatgattaca actctagaga tgaaaataat aaaccaaaat 

12961 taattaccca attatttaaa ccttcttgga aagttaatgt ttggggattt aaatctgaca 

13021 aagttaaatt gaacattaga acactttatg cttctcactt atcaatggct aacttagaaa 

13081 atctacagtg tgctgcttgt caaagtactt ataaagtgga aatgcatcat gttagacaga 

13141 tgaaaaatct taaaccaatc aaaggtactt tagattactt aatggcaaaa gcaaacagaa 

13201 aacaaattcc attatgtaga tcttgtcaca tgaaacttca tgctaataag ttaactctta 

13261 atgaggataa aaaagtttag atatcttaaa tgtagtggag agccgtataa ttacgaaagt 

13321 atcccgtacg gttcggtgac gagccgtgtc aaccctgcaa agggaatgcg tcttagttca 

13381 atgatttgat aacaatattt atcttcttaa tcggtataaa ttatatggca ttctataatc 

13441 catatggatt tatggaacca gattgtgctt taccagcgga tcctctaaaa actccaatgt 

13501 ctattgttcc agaatggtat ttattacctt tctatgctat tttaagagct atacctaact 

13561 tccaattagg agttatagca atgttattat caatcttagt attactatta ttaccattat 

13621 tagatttctc agctattaga ggtaatagtt ttaacccatt tggtaaattc ttcttctgga 

13681 catttgttgc cgattttgta attcttgcat ggattggtgg atcacatcca gaaaacgtct 

13741 ttatcacaat cggtgctatt gctacaatct tctattttag ctacttcttt attttaatac 

13801 cagtatatac tatattaggt aatacattaa ttgatttaaa tttaagctca attaaacgat 

13861 aatctcttcc ccctttacac ta

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[ORF sequence]

 

807 a.a.

 

MRRCGIYVYPHRERDILCVKIWTIHLGSWGNPMPNRACVQKVLPVTKQISSDGSVQID

TVRAVLPEFQFPSHPQIGDCLSWIETFFSRSLVGFYDQGYTPGEESCTNSTIKGMSGK

PTSIISNIYTTTGPAKVSNDYAVRDPGVAVDHFDQYGPLKEGRSLNSAKISTQWSGSA

TLKSSNRSIFNIGLGYINTFLGVSNVRGFSTGSGRSKNVLNKLDDLSKRSKNYPNLVI

DRNLYKDFLLNRDMFLIAYNKLKSNPGMMTHGLKPDTLDGMSIDVIDKIIQSLKSEEF

NFTPGRRILIDKASGGKRPLTIGSPRDKLVQEILRIVLEAIYEPLFNTASHGFRPGRS

CHSALRSIFTNFKGCTWWIEGDIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNA

GYLTENRYKYDIVGTPQGSIVSPILANIYLHQLDEFIENLKSEFDYKGPIARKRTSES

RHLHYLMAKAKRENADSKTIRKIAIEMRNVPNKIHGIQSNKLMYVRYADDWIVAVNGS

YTQTKEILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHFGI

LQRNSGFILLSAPMDRIAKKLRETGLMLNHKGRSVIRWLPLDVRQIIGLANSIIRGYD

NYYSFVHNRGRFATYVYFIIKDCVLRTLAHKLSLGTRMKVIKKFGPDLSIYDYNSRDE

NNKPKLITQLFKPSWKVNVWGFKSDKVKLNIRTLYASHLSMANLENLQCAACQSTYKV

EMHHVRQMKNLKPIKGTLDYLMAKANRKQIPLCRSCHMKLHANKLTLNEDKKV

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[secondary structure]

 

 

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