Schizosaccharomyces pombe cox2.I1

[Back to mitochondrial introns by organism] [Back to home page]

Information of Schizosaccharomyces pombe cox2.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtg cgctgtctag cttagttatt gcgctgtgtg taagaaacac catccttata

421 gcctcaggat gtaaaagaat tagcttatcc gacgtcgaaa gactagggga gtgtagcatg

481 ctaataaagg attgtccgtt ttatgtaata ataaaatatg aaacaattcg acttatttct

541 ctcatggtaa gtttatttag aaattatgaa gttaacacta ctttagatat aacttattac

601 aaacatatct atttaattag aatagaggaa gaccagagct ctattttggc tataattaaa

661 cattcactac aacatgtagg acagtttcta ttacctaaaa gagaatctta cgcaatacta

721 agaaattcag gattccctaa gggaagtaat tcctatcttg ctcctcaagg acaagagtct

781 gtacaaggcg ggaacggagg atccgtagta gaaagaatct caacaactat agttaattct

841 ttcaaaggga tccagtcaaa tcacttatca acctctttat ccggtaaacg ttattactcg

901 acaaagaatg tatctgataa atctaaatct gaaataaaac agatctatga tattagttat

961 aaacaattat gtaatctaga tttaattaaa gaagcttatt ctatactaaa gtctaaacca

1021 ggtaatatga caccaggtac agataatgaa actttggata aaatatcttt aaaatgggct

1081 gaaaaaacca tacaagaact aaaagataga tctttccaat ttaaaccttc aaaacgaata

1141 tatataccta aaaaaaatgg taaactaaga ccattgggta taccaagtcc aaaagacaaa

1201 gttatccaac aagcaataaa aatgatctta gaatccaaat ttgaaccgat gttcttaaat

1261 acctcacatg gatttagacc ttctagatct cctctatctg caatctttga agttagaaaa

1321 tggaatggta tttcttgaat gattgaagga gatattaaag ggttctttga taatattgat

1381 catcatattc tagctaatct tcttgaaaaa gaagttaagg ataaaaactt aattgatctt

1441 tattggaaat tagttagagc tggttatgtt aataatggtg tatatcaaga atcaaatcta

1501 ggtgtaccac aaggaggtat cttatctcca cttttatcaa atatatattt acatcaattt

1561 gatctattta tgaatgatct tattaaaaaa tatagtgatg ataaacctgt ttctagagat

1621 aataaaatac atactagatt attaacaaaa atcaatggtg aatcaaagaa aaaaaatcct

1681 gatactaaac taattagaag tatgaaaata caactaagat caattccttc aattataaga

1741 gatgagaata caggaaaaag agtatattat aatcgttttg ctgatgattg ggtaataggt

1801 attattggat ctaaagcttt agctgaaaag attaaagccg aagtttctga atacttaaaa

1861 aatagactat taattagttt aagtgaagaa aaaactaaaa ttactcattt aacttctaaa

1921 aaagctaatt atttaggttt ccaaattttt agaagaaata gaaaatattc agaatctatg

1981 ttagttctca ataaaaaatc aaacacttac aaaagaggat caaactcaag agtaatgctg

2041 tttgccccta tagataaatt agtagataaa ttagttgaac ataaattcgc taaaagggtc

2101 ctaaataatg taaaacctgt agctattaca aaatggatct accttgaacc atatgaaatt

2161 atatctagat ataatgccat tctaagaggt attttaaatt attataaacc agttgataat

2221 agaaatcaat taagttatat agtttggatt ttaagattct cagctgcttt tactttagct

2281 cgaaaatgga atattagtcc tgcaaaagta tttacaaagt taggtaaatt cttaactata

2341 aaaataacta atgaaaaagg taaagaatcc caagtttcat ttgcatctcc taagacttta

2401 gctagagata gaacctttaa tttagataac tatttaaatt ttgatccttt tagagtaaaa

2461 tactatgaag tacgatctca tcatgtttgg gatgaaccat gttcaatttg tggttctact

2521 gataatgttg aaatgcatca tgttaaacat gttcgaaaag gaaaaatagt tggttttaca

2581 gctctaatga gtaaattaaa tagaaaacaa atcccagttt gtgtaaattg tcatgacaaa

2641 attcatagtg gtaaatatga tggattatcc ttaaaaaata ttcatctaaa caccaaaaaa

2701 gattagattt gatggagagc tgtatgcatt gaaaggtgca cgtacagttc ggtgggagac

2761 tgctcattat cctatttatt taggactgga cagccgaccc aac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

1 atgttatttt ttaactctat attaaatgat gccccttcta gctgggctct ttatttccaa

61 gatggtgcat ctcctagtta tttaggtgta acacacttaa atgattatct tatgttctat

121 ctaactttca tctttatcgg tgtaatctat gctatctgta aagctgttat agaatataat

181 tacaatagcc atcctattgc tgcaaaatat acaactcatg gttcaattgt tgaattcatt

241 tggactttaa ttccagcttt aatcttaatt ttagttgctt taccatcatt caaactttta

301 tacttattag atgaagtaca aaaaccaagt atgactgtta aggcaattgg aagacaatgg

361 ttctggagtg cgctgtctag cttagttatt gcgctgtgtg taagaaacac catccttata