Zea mays nad1.I4

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

1 gcaggagggg ccctgatcta tcaattgagg gagcaaaaaa caggctttgc tccccttttt

61 ttaaatgaag aaagaaagaa gggtcgaagt ttagaccgct cacagtagtt ctacccatag

121 aaaagatcat gaaagaggcg atcagaatgg tacccgaatc catttacgat cccgagtttc

181 cagacacatc gcacttccgc tcgggtcgag gctgccactc ggccctcaga cggatcaaag

241 aagagtgggg aacctctcgc tggtttttgg aattcgacat caggaagtgt tttcacacca

301 tcgaccgaca tcgattcatc tcaatcttga aggaagagat cgacgattcc aagttctttt

361 accccactca gaaacagttt tccgccggac gactcgtagg aggtgagaag ggccctgact

421 ccgtcccaaa cagtgtacta ctatcggccc tattaggcaa tatctaccta cacaagctcg

481 atcaggagat agggaggatc cggcagaagc acgaaattcc tcttgtagtg aaaataagat

541 cggttctatt aagaataggt cgtcgtattg atgaccaaga aaagtatgga aaagaagcaa

601 gcttcaacgc tccccaagac aacagagccc tcatagtggg gagggtaaag agcatccaac

661 gcaaagcgac ctttcattcc cttgtttcgt cgtggcacac cccccccaca agcaccccca

721 ggcgaagggg agaccagaaa acgcctttcg ttttccctcc ttccctagcc gccttcctta

781 acaagccctc gagcctcctt tgcgccgcct tcctcataga agccgctggg ttgaccccga

841 aggccgaatt caatggtaga gaaggcttta ataagaattt ggccatgaga gaccttctta

901 agtattgcaa aagaaggggc ccgctgatag agctgggcgg ggaggcgata ctagttacca

961 ggtcagagag aggcctggcc cgtaagctgg ccccctttaa aagccattcc ttattaataa

1021 ggatttgtta cgcgcgatat gccgacgact tactactggg aatcgtgggt gccgtatttc

1081 ttctcataga aatacaaaaa cgtatcaccc acttcctaca atccggcctg aacctttggg

1141 taggctccgc aggatcaaca accatagctg cacggagtac ggtagaattc cccggtacgg

1201 tcattcggga agtccccccg aggacgactc ccatacaatt cttgcgagag ctggagaagc

1261 gtctacgggt aaagcaccgt atccatataa ctgcctgcca cctacgctcc gccatccatt

1321 ccaagttaag ggacctaggt tatagtatcc ctatcaaaga gctgacgaag gggatgagcg

1381 gaagaggtcg tctactggac gcggttcaac tagcggagac tcttggaaaa gaaagtcccc

1441 aagttagcgt attatggggg accgtcaagc acatccggca aagatcaagg gggatctcgt

1501 tgttgcatag ctcaggtcag agcaaggtgc catcaggcgt tcaacaggca gtctcacgat

1561 cgggcatgag tgtcctgaag aataaattgt atactccctt tggtcggaag gcggcggggg

1621 aaggaagggg acactgggcg ggatctttca gcagcgaatt ccccatacag atagaggcgc

1681 ctatcaaaaa gatactccga aggcttcggg atcgaggtct cattagccga agaagaccca

1741 ggccaatcca cgcggcctct ttgaccaacg tcagcgacag agacatagta aattggtccg

1801 cgggcatcgc gataagtcct ctgtcctact acaggtgctg cgacaacctt taccaagtcc

1861 gaacgattgt caactaccag atccgctggt ccgctatatt caccctagcc cacaagcaca

1921 aatcttcggc gcggaatata atcccaaagc accccaaaga ctcaaatata gtcaatcaag

1981 aaggtggtaa gacccttgca gagttcccaa acagcataga gcttgggaag ctcggactcg

2041 gtcaagatcc gaacaacggc ggagcactca actacatgtt taataagtag ttgtcttttt

2101 ctattttgat tttagcgaac aggcgtttac atgagattag ttgagtaggc ttgccttagt

2161 tgtctgctat aagataagat agctagttgt ggtcgaaaaa aaaggctgaa ggcttcgcta

2221 tcgctcatgg cttgtattgt agtcgtagtc ttgtagtcgg ccctccatgc ctctttagtc

2281 tttctaatcc tgaggccttt ttccttcatt cattttgcgg tagcttacgc gtcagaaaaa

2341 ggcctccttt ccggcccgga agatcgcttc gcttctggcg actagcttct acccacaatg

2401 gctgaagcta ccttgaatca atcaatgaat gattcgtaac cccgggttcg aggacccgtt

2461 ggtcaaagga aagggggggg ccctgattcc aggacggagc cgtatgaggc gagagtctca

2521 cgtacggttc ctttgagaag ggtgtgatac caccacctat caggcccgac gagcggtcca

2581 cggagctgca tccctactca c

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

Note: For this intron, there is no 3' flanking sequence available, and only 339 nucleotide of 5'
flanking