Allomyces macrogynus cox1.I3

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Information of Allomyces macrogynus cox1.I3 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgtc gttgtggata cttatgggtt gtctcttagg tgggtttgtc

24421 gcagacttcg gtctcaccat cgtagctgag tggtgcgccg acttttctca cataatagag

24481 actgaaggtt ttgcactcct tcataaatca tatcacttac ctgatgccga aatggctagg

24541 ggaccagagc atgtgataaa cacaatacac tgtccttgca gcttggactt ggaagtattg

24601 ttagataggt ctatcatggt atctccattt atcgctggtg gggcctcgct aaacccagtt

24661 aggtgctgca ataacactaa tttgatcgag tcatctgtac cagaccagag ttcggatgag

24721 gcaaacttga tcacgcctcc ttccacggaa gacaatagcg atgtacctaa aatagacata

24781 agccataagg aatcaactgc gagatttcct aaggggagca atccctatgg agacggagtc

24841 ccaatagtag ggtgcggacg tgcagcgcag tccgtatctg aagtggggca gcggaactat

24901 tcgaccgaca ctgatgctgt gaaaatcggt acaggtggtt attcgaaatt ggtaaaactt

24961 gctaatggaa agtttactgg attatatgat acgatcatgt ctattgaatt tcttcttctc

25021 gcctatagga atatcaaatc caaggcgggg aatatgactc ctggtcctga tgaccagacg

25081 ctcgacggga taacccccgg cttcttcgag gacttaatta agtcactcaa gaatgaatcc

25141 ttccgattca aatcggttaa gaggaccttc aaaaaaaaaa ccaacggtaa gatgaggccg

25201 cttggtattc ctgcccctcg tgacaaaatt gtacaggagg ctatgagaat tcttttagag

25261 ttcatctttg agcctatttt ctctgacttt agtcatggat ttagacctca gagaagctgc

25321 cacacagctc tcaaggaagt ctcaaaatgg aatgggatga cttggtgtat tgagggggac

25381 ataaaatcct tcttcgataa cgttgatcac aagattctag aaaatttcct tcgggaaaaa

25441 atcgaggatc aacgatttat cgatctcttc tggaaactgg ttcgtgccgg ttacttggag

25501 aaaggggttt cctttgattc cccattagga gtccctcaag gtgggattat ctcacctttg

25561 ctttctaaca tctacttgca tgcctttgac atgtttatgg agaaggttat gagtgatcat

25621 agctctgata gcaagtcgat ctcgaaagtg aaccctaaga tggtctctta tagtaacaag

25681 ctcagtaagc tcaacaagca gtatcaggat actaaggatc ctgcgattct caaagagatt

25741 cgtgccctta gacttgaacg gaataaaatt ccttcaagaa ttcgaactgg cactcgtgtc

25801 agatatgttc gatatgctga tgactggtta gttggtatta tcgggcctag ggaattggca

25861 gtctctctta aggagatgat tgctagtttc ttagctcagg agcttaagat cactcttagt

25921 cctgagaaaa cgaagatttc tcactttggg aaggatctca tttctttcct cggtgtcaat

25981 cttcggatcc ctaagcctgc tgagagtaaa gtagttctca gaaaaggggc taagggtcat

26041 actcttgcca gagtcaacca cacaagggtg ttcttttata tccctgtgga taagatcctt

26101 gcgaagttgg cagcgcaagg ctttcttaaa gattatgttc ctggtggtaa gatagtgact

26161 aatgccatca ctaagtggat tttcttggat cacagatcaa tcatttctaa gtacaattct

26221 attattaatg gctttcttag ttactacagc tttgtggaca acctcaatgc tttccatctt

26281 atcatcaatt acatcttggt tcactcttgt gctaagacat tggccagaaa attcagactg

26341 gggtctagag ctggtgcctt taagaaattt ggaggtgatt tagctgcccc agccccatcg

26401 ccacaggaca aaccattagg tttaaatctg aagaagtctt atgcgaagac taacaagttt

26461 aacattaaga cttcttatcg agaccccact gaggttctta attggagcct tagaactctc

26521 accccttttg atccgtgttg ggtttgtggg tctgaaaagg acattgagat gcatcatgtg

26581 agacatctca gaaaaggggt tgatcctaaa caaaaaaggg tcactctttt aatgtctcaa

26641 ctcaatcgta aacagatacc tgtgtgtcgt tcttgtcacc ttaaaataca taagggattg

26701 tataatgggc cttctatcag aaatttgaaa taatgagcgt acgtttcgga ctctgatttt

26761 agttggttat taaagggcgt cccctcttct catcttcttt gaggggttgt ttgcccaacc

26821 actttatctc cttatcttac cccggtctac gggtgtctat catgtcgacc ttagagtctt

26881 agacttttac atacttacta tgaagaagaa tactatccct actttccgat ttgctgttgg

26941 cttgttggtt aaaaatacct taatgcttat tatttctcca gtctattcag agtctgagtt

27001 ggctcttgct catgctatgg ccattgcagc caagcttgaa tttacctttg tggagagttt

27061 ctcggctcaa gatatagaga agcgggtcat cgtgggtgat cttgaaggtt tcgttatcca

27121 tggtcaatcc caggatattg tcaaatttgg ttcggcctca agaatcaaag tcactccgac

27181 ttatatccca tcgtctgact ttgcgcgtcg agttatatct ctttacgatg taacgactcc

27241 aaaaaaggat aaagagtaac aactcttctt cttcggggcc ctcaggcccc cccttatttc

27301 gtatcatata tatcccagta gggtagaact tttattagtt ccatcccttc gccaacgcta

27361 gtttcgtgga gagccgtatg cggtgaaagt tgcacgtacg gttcggtggg aggtttctta

27421 tatccctcgt ggagtaggct atcgacccaa c

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

actagat

23881 catttattgg tttatatgga tgaagacata gtccgacctg acatgaaaat gttgggaatt

23941 agcgaatgct tggtggtttc gggaattatt tcgtacctat catgattggt gcgccagata

24001 tggcaaagaa cgtcccttcg gccctccccc cggggacccg ttaaaactac tgtatcaggg

24061 aatgccgtgg aaattcgtaa gatttcctta ttacctcact atatgcacag aattcttcaa

24121 aagtgtgatg agacttacac aggtatagaa acaactaaat aaaacaatag taatagttgt

24181 aaaatttcta tacacatgga gagaatatgc aggaaaccct gagtcaattg tactctttag

24241 gaatcctcag agactatatg tgaggctcct atttaagatc tgacttttat aggatgaaga

24301 catagtccga ccagtcttga aagagattgg ctttaatatt gattcccaag attaaataac

24361 attagcttct ggtgtgcgtc gttgtggata cttatgggtt gtctcttagg tgggtttgtc