Amoebidium parasiticum cox1.I6

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Information of Amoebidium parasiticum cox1.I6 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgcca tctcactatt agcattcgcg ggtacaaata ccccaccaca

3361 gtcttctcgt tcttctattt ataaagcaag tcatatgcat ggaccattta ctccgacaac

3421 atgtacagcg gttgtattat gagaagaacc cagggaatta cgttttagat tgaaatcttt

3481 tacgacatcg aaacaccgaa atagtataag attaacacct agacttagag atatcttagt

3541 aggattatta ttaacagacg catgaatgtc ttggaatgaa aatggaaacc cacgtattgg

3601 attcaaacag ggtgaagtaa actttccttt ttatggcatg tgtatttaga acttatatct

3661 ttaacatcta gtttccctgg cattcgacaa tcaatagtaa gaggaaagtc tcataattca

3721 cactcttttg atacaaaaaa tctccaatgc ttaaatgaac taagcaatat tctgtacact

3781 aatataaatg gtaaaatggt aaaatctatt aaaggagaac tatttgatta tttaaactac

3841 agaacattag cgtacatgat aatgggagat ggagcgcgca aaaataaagg gtttgtaata

3901 tgtctcgaga atttcacact tcaggaagtc gttttactat taaatatgtt agcaatcaaa

3961 tttaatttgg aggacctaac tattcaaact gaagactcta aaccgtctcc ttttaaaaaa

4021 gaaaaagagg aaattaagaa gatttataga atctactttg gaatagaggg aaccaaaaca

4081 ttattacctt tcattaaacc ttatttacta gaccattttg attatcgcat atcgggaatg

4141 actaaagcac agtatgaaca acgtggtgta aagcataaat cttaggtagt aggagccaat

4201 tctacactga caacagcatg atttaaaagg ggaatgaaag cgtccccaag ctagaatcct

4261 catggtaagg caaacgaact caaaattact ttataactaa tgtgaattaa acaagtagcg

4321 gggtttaatt atgagaagat cacatataaa gtatggagta cctaaaagga tttagagaac

4381 aagtatgtta caatgttctc accgagtgct aataggaatt tgggatcacc tgagattcgg

4441 aagagtcgga ggtgacggag ttctcatagt aaatgggtaa tcaaatactc tagattaggg

4501 gaaaccttaa ttgactgctt gggcagattg aaggggaaca ggagagtggg gattgcaaga

4561 ccattctctg gagagccgta tgatgggaaa ctatcacgta cggttcggga aagggctttt

4621 aactaatggt ccggtaaaag gactggggtt aatcttctat ttcac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

agacggat

2821 gattaagtgg atttactcaa gcggatggcg gattcagtgt tgttattcag aaacgtaaag

2881 cagctacatt aggttacaga gtacgtttaa aatactatgt agatcagaaa aatgaatctg

2941 agatgcttca agctatcaga aatttattta atacaggatc agtcgttaag cgttcaggac

3001 ctcctggaat gaaacgatat gaaatatata gtaacactgc cgttatcaca gttattaatt

3061 attttacagc ccatccagta ttctttgata aacacattgc tttcataaaa tgagtgaaaa

3121 tctattatat tattaagaaa agtaggttaa ctcagaccaa tcttgataag atactaaaat

3181 tagaaaacaa tgtgagtccc tctcaaaatc ctaggttaaa gatatagtcc actgcaatca

3241 attgattgct ttgcatcaca tgttcacagt agggatggat gtagactcaa gagcttattt

3301 cacagctgct acgtgcgcca tctcactatt agcattcgcg ggtacaaata ccccaccaca