Arabidopsis thaliana nad1.I4

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Information of Arabidopsis thaliana nad1.I4 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgg aactttgcat ctgacattcg

541 ttgggcttcc ctcttcggga gcctgcgtcc cggccgtttt tgtgcaataa acccctccgg

601 ccgaagacta gtggtaggtg gtcccgcgta cgtttcggag aagggtagcc ttgtgtgtaa

661 gcacagcaat gaaccgcggc gaaccctcag acgacctatc taagattagg ggggggggag

721 atcctcagta gtggtgaccc tttcacctct tcccacggac tgatacatgt accgaatgct

781 catacgggaa agttgactcc tgggtctgga acctgggggg ttgctccgag aaatcctttc

841 tttctcgtcc actcaggggg gtgcggacac acctgcgcgg attacaggtg acggttacaa

901 gaatgcgggg aagtgaacag tacccgacga cattcaggga tggatgtaga cccatcgggc

961 agggataatc attccggtcc tgggagaggt attgattact cgactaaaag gagaggaacc

1021 ccatcgactg aaagaagagg agaggtggcg accattttca agaaccaaaa agactgaact

1081 gagggaagcc ctatgagtca ctgaaacgac ggcaggaggg ggcctttgat tataaaaaag

1141 gggagcaaaa aacgagcttt tccccccttt acaatatgaa gaaagaaaga agggttgaag

1201 tttagaccgc tcacagtagt tctacctata gaaaagatca tgaaagaggc gatcagaatg

1261 gtactcgaat ccatttacga tcccgagttt ccagacacat cgcatttccg ctcgggtcaa

1321 ggctgccact cggtcctaag acggatcaaa gaagagtggg gaatctctcg ctggttttta

1381 gaattcgaca tcaggaagtg ttttcacacc atcgaccgac atcgactcat cccaattttg

1441 aaggaagaga tcgacgatcc caagttcttt tactccattc agaaagtatt ttccgccgga

1501 cgactcgtag gagttgagag gggcccttac tccgtcccac acagtgtact actatcggcc

1561 ctaccaggca acatctacct acacaagctc gatcaggaga tagggaggat ccgacagaag

1621 tacgaaattc cgattgttca gagagtcaga tcggttctat taaggacagg tcgtcgtatt

1681 gatgaccaag aaaaccctgg agaagaagca agcttcaacg ctccccaaga caacagagcc

1741 atcattgtgg ggagcgttaa gagcatgcaa cgcaaagcgg cctttcattc ccttgtttcg

1801 tcgtggcaca ccccccccac aagcaccctc cggctcaggg gggaccagaa aaggcctttc

1861 gttttccccc cttcgtcggc ccttgccgtc ttccttaaca agccctcgag ccttctttgc

1921 gccgccttcc tcatagaagc cgccgggttg accccgaagg ctgaattcta tggtggagaa

1981 cgctgtaata ataattgggc catgagagac cttcttaagt attgcaaaag aaagggcctg

2041 ctgatagagc tgggcgggga ggcgatacta gttatcaggt cagagagagg cctggcccgt

2101 aagcaggccc ccttaaaaac ccattactta ataaggattt gttacgcgcg atatgccgac

2161 gacttactac tgggaatcgt gggtgccgta gagcttctca tagaaataca aaaacgtatc

2221 gcccatttcc tacaatctgg cctgaacctt tgggtaggct ccgcaggatc aacaacaata

2281 gctgcacgga gtacggtaga attccttggt acggtcattc gggaagtccc tccgaggacg

2341 actcccatac aatttttgcg agagctggaa aagcgtctac gggtaaagca ccgtatccat

2401 ataactgctt gccacctacg ctccgccatc cattcaaagt ttaggaacct aggtgatagt

2461 atcccgatca aacagctgac gaaggggatg agcaaaacag ggagtctaca ggacggggtt

2521 caactagcgg agactcttgg aacagctgga gtcagaagtc cccaagttag cgtattatgg

2581 gggaccgtca agcacatccg gcaaggatca agggggatct cgttcttgca tagctcaggt

2641 cggagcaacg cgtcatcgga cgttcaacag gtagtctcac gatcgggcac tcatgcccgt

2701 aagttgtcat tgtatactcc cccgggtcgg aaggcggcgg gggagggagg aggacactgg

2761 gcgggatcta tcagcagcga attccccata aagatagagg cacctataaa aaagatactc

2821 cgaaggcttc gggatcgagg tatcattagc cgaagaagac cctggccaat ccacgtggcc

2881 tgtttgacga acgtcagcga cgaagacatc gtaaattggt ccgcgggcat cgcgataagt

2941 cctctgtcct actacaggtg ccgcgacaac ctttatcaag tccgaacgat tgtcgaccac

3001 cagattcgct ggtctgcaat attcacccta gcccacaagc acaaatcctc ggcgcggaat

3061 ataatcctca agtactccaa agactcaaat attgtaaatc aagaaggtgg caagatcctt

3121 gcagagttcc ccaacagcat agagcttggg aagctcggac ccggtcaaga cctgaacaag

3181 aaggaacact caactactag tctagtctag tagtcgtttt tttctattag ttgcgatgcg

3241 aacaggcgtt tacttatgag attagttgag tagacttgcc tgagttgtct gctataagat

3301 agagctagtt ttggggtagg gcttttgaca taaaaaagcc ggataggctt ggcttcgcta

3361 tcgctcatga cttgtattgt agtcggcccg gaatgcctcg gtagtctttc taatgccttc

3421 ttccttcatt cattttcttt tagttgcggt agcttccgcg ccagcaagat acggacagcg

3481 aagccaaagc aatactaaac aagcgagaaa agtccttgtt attagtaaag cgctaacgat

3541 caagaaaagg ccccttacta ctagataggc taacacgcct ttactaatta tatatatata

3601 ataaggtatt tctcaaagta aagtttctag cttgtttctt tagaaagatt gcggggggcg

3661 ctcacgtttt ttggcccctt cccggcccgg aagttcgctt ccggcgacta gcttttacgc

3721 tatcgcttgg acttgtcact tcgtaccttg aatcaatcaa tgaatgaatg aaaacgcctg

3781 actaggaata gaaaggaagg acaggttggt tcgaggaccc cttggtcaaa ggaaaggtac

3841 aaaggaactc gaccacttgt tgggagaggt tgtgaaacaa actcgactaa aaggagaggt

3901 ataaaaatga ttccggggcg gagccgtatg acgcgagagt gtcacgtacg gtttctttga

3961 gaagggtgtg ataccaccac ctatcaggcc cgacgagcgg tccacggagc tgcatcccta

4021 ctcacc

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

ctctcc ttttagtcga gtaatcaatc cctcgactca tctctctatc

61 cataaaaaag cccttcccag aggagagcgg aagctccagg atgagtatgc cctggattcc

121 cggattcatt ctcgtcctga tccactctgg aattttcgga atctacaaaa acattctagg

181 aaagggctcg taatgatctt ctcaaagatc acaaggtgct gaagtggcag gataggaggg

241 ggatccgtag tttttgtgaa agggatgctc ttacttatca tgtctgaaaa gaaaaaccga

301 attcctcgat ttcattcgat tcatccacat ttccatttct tgtagaggaa ggctaactgt

361 gcttgctggc tgggagctgt atgagcggta acgtccacgt acggttccgt gagaagggcg

421 gtggacagaa atggccttgt tgtaccttac tctcgtcttc aatggggtct gctctttttt

481 ttttgggaga gtatgccaat atgatcttaa tgaggtgcgg aactttgcat ctgacattcg