Candida parapsilosis cox1.I1

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Information of Candida parapsilosis cox1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgctatta

12721 tagtaatatt attatgtaat gtaatgataa tactatgatt tgccatcatg gatggattaa

12781 tgaggttaaa ctcattacat gaatatctaa gtacagaggg cttagccaac gagctaatct

12841 ctgaaggttg tacgaaatgg ggaaaaatac aaactctcag tgaagtattt agtactctag

12901 atatagcttt agtggtaata ttaagtttaa tgagaatgaa tccttattat aaaattggtt

12961 cagcgatact agggtcttct gagattaata gtagatcaaa gagcttcata tatgaaagaa

13021 ataaagatga atgcatttat ttcaaatcca tcatcagaag caccaaaaca gaggaggact

13081 taatatttat ccaagacggt aatagtctga aggcttactt aaccaaacac gggaacctcg

13141 gaaagggtat attattgaag tgaaataatg tcaaatttca catacttaaa tcttgattta

13201 aggttactgt aatatatctg tatgtatatt cattattggg tatagttaga ttatataacc

13261 tatttattat aagtttcata caaatcataa atagaataca cgggggcaag ataagtgagg

13321 aagcaaaagt tctaagtaac gttagaaata ccataaaaca tcaatctagg gatagattgg

13381 gtttacaatg gccaagagtt gaacatattg gacaaaagct gaattcacga tgccttagta

13441 tgaatgaact ttatatccag aaacgtagct attcaaagac tagggaggat ataagcgaat

13501 ttcaattata tctgaagtct gtagttaatg gagtgtttgt atgaccaaat agttttgtct

13561 tagggcatat taggaaagtt gtacatgaac aacaaatgga attagttcat ttagctaata

13621 tacatggtgc taaatctgaa ttagtcatga agagacaaat gatgttagta aattcaataa

13681 tatttagatt acatgctgtg gataaattat ctcattctag aggttctcta acatctggag

13741 tggataatgt atgtattgaa ggagtagata aggatagagc cttactcgtg gaaatagtcg

13801 aatgactagg aacaacagta aaacatccta agttatataa gagtgatccg gtaaaaagag

13861 tttgaatacc aaaaggaaat gagaaactta gacctatagg gattcctact cttaaagaca

13921 gaggtttaca atatttaatt aatttagtag ttgaaccctt agttgaaatg actagtgatc

13981 ctcataacta tgggtttaga ccttatcgtt ctacgaaaaa tgccattgct tatttgagat

14041 ctcatttaca tactattgat agttctaaaa agggaaatca ttttacaact gcatcaaacg

14101 ttgagaataa tttattaaga ttattaccag aaaataaatg aattctggat gctgatatca

14161 aaggtttctt tgataacatt aatcatgatt gattacttaa taacttaacc cttcatccta

14221 aattattact cattattaaa gcttgattaa agagtggagt aatagatggt aaaatatttc

14281 aattaactga aagtggtact cctcaaggag gtgtcatatc tcctacttta gttaatttca

14341 ctctgaacgg cttggagaag gtagtaatgg aagcattata tcctttaaca aaaagtaaag

14401 agcagagaat caggattaaa ttaaaggatg gtacgtatac atgtgtcgct tcctcattag

14461 catatgtaag atatgctgat gattttgtcg tattagttag atctaaacac attatgctta

14521 cattcattaa acctgctata gaaaagttct tagctgaacg aggtttgaat ctcaatgaag

14581 agaaaactaa actatttaga ttaagtgatc caggttgtca attagacttt ttaggatata

14641 cttttaaata tcaagataaa tgaagtatta aaagacatgt cttttatcat aatcatgcgg

14701 gaagtagagg tatagcttta taccctaata aaacaaaggt cttatcgttt attgagaaat

14761 taaaacttat cttcaagaaa tctatgaatt tggacgccta taacttaata accaaactaa

14821 atcctatatt gagagggtga tctaattatt ataatatggg taattcctct cattatagag

14881 atacagtgcg gaattccctt taccacttga tatgaaggtg agctcatcgt aaacatagaa

14941 gatgaaatag acatgctatt gcaaaaacct attttctgac tgctaaggtt gagggaacta

15001 agctttccaa tactgagtat tctatgttta agaatgttaa atgagtattt catggtaaaa

15061 caagtgcaca atcgagatat aatgttgata aaactaagtt aatatattta gtagatgtag

15121 gaaatgtatc tcaactactt gctgctaaat actacaatat tccacagaat ctaattcata

15181 ttcatgcgta tcataacgat tatatgaaaa tagttgaata taatactaac gttaatttca

15241 aagctttagg ggtaaatgca cccttcaaac agaaattatt aatcagacag aacaatttat

15301 gtcctgtatg tcaaagcaca ctgacggaat cctcggtagg ttgaacgaat gtacttcaca

15361 ttcatcatat taatcctatt gccaaaggtg gtgcacggaa caaattagac aatctaattt

15421 tagtacactc atgatgtcat aaagacttgc atcgtgtgaa tagaagccat aagaacgaaa

15481 tagtgttata aggaaataat ttattagatt agttcttatg atactcgggt gagccgtatg

15541 cagggtgact tgcacgtacg gttctttgag gggttttaaa ggtgacttta acatccatct

15601 cta

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

ttattattt tatatctctt tttatttatt

12241 ctttatttta ttttatctta tatattgtta tatattatat atttatattt catatattat

12301 tatatcatat ataattagtt tttatattaa atatatttat ctaattaata gatatattat

12361 atataggtga gttattaaga tattttttaa tataaagaat atttgttaaa atataaaata

12421 tataaattat aagtacatat ttttatatgt catatacaac acgatgatta tttagtacat

12481 cacataaaga tattggtatt ttatacctta tctatggtat gattagtgct atggttgcta

12541 cagctatgtc tgtaattatt agattagaat tatctggacc aggtgatcag ttcttacacg

12601 aaaatcggca agtatataat gttcttgtta ctggtcatgc tatagcaatg attttcttat

12661 ttgttatgcc tgtattaata ggtgcatttt tacgacgtga acagttagta agtgctatta