Candida stellata LSU.I1

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

Note: This intron sequence occurs on the reverse complement of the original

GenBank sequence. Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

gt gcgacaagaa gttctatgtt aaaatatgga gaatacccat

20641 aatcgtccat tatatacgat tagtctagtg tgcatgcggg ttaatttaac tgtatgaagc

20701 cacattacaa tgcgaataaa tcttaactaa caaggatgac ttttgcagac tagatgctat

20761 gctaaggaaa cgaatttgtg gttaataaaa tcttgtacac gtaaataact agttagtaat

20821 taagttatac gcagatggac ttaaaaaggc ctgggtttta agttatataa tttaagagaa

20881 aagtctgcca agataaagca aatatgctaa ggcatcatta aggtttaaca tagagaactt

20941 ggtaaactac atatacacct atttatagga agtgacatta taaagtagtc attagcaagg

21001 ctatggaagt agtcataaag tataggtagc agaagattca agaaaaagcg aatggacttt

21061 tgtaatgaga gtcataggat tatatccaag atgaaaagat gctgacttcg aagaatgtat

21121 aaatacaacc atagaatata tattgattac tcacagttgt gagcttcatc ttatttttct

21181 ggtgatttca gagatggaat aatgaagata agtaatggat ctcacgcttg tctatcatca

21241 acataagtaa atataaaaat gtaaagacta tagtaatagt taattgcagt acttaattat

21301 gacagacaaa aacttaagaa gacttagaaa aatgcaaagc agaattattg cagctgtaaa

21361 agatcaaaac tgacttaaag ttagggattt acaaagaata ctggttagaa gtggatatgc

21421 tagggaatta gcagtagaca caattgcatc atcaccggga agtaaaacac cgggagttga

21481 caacttcatt attaagaacg aaatagataa ggccaagata atcaaagtac taggcaagat

21541 tgagcaatac aatcctaaac cggtaaaaag aatctatatc cctaaggcta atggtaaatt

21601 aagaccacta ggtattccaa ctatagcaga cagagcaatg caatgtctgt ttagctttgc

21661 ccttcagcca attgctgaaa ccttgggtga tcaacattct tttggtttcc gtcctaatag

21721 atcaactatt gacgcgttca accatttgta tcgggctcaa tttattaaat cttctaatgc

21781 tccagtgaat aactgagcag tagatgcgga tattaaaggt ttctttgaca atatttcaca

21841 tgagtgaatt ttaaataaca ttaaaattga acctcggata ttagctaaat tccttaaagc

21901 gggatttatt gaatataata accaagtgaa tgagtttcat gataccaatc taggggtacc

21961 tcaaggaggt gtgatatccc caatgatagc caatatggtg ctagacggat tagaacagca

22021 catttatgat ggactaaaag caaggaacat ctataatggt atacttaaga gagttcactt

22081 tattaggtat gctgatgact ttgttattat caccccttat gaatgggttg ctcaacggac

22141 tatacctatt gtaaactcct ttttaaaaga aagaagctta tcattaaata tggataaaac

22201 ccacatttta gatatctcca aggataattt agatttctta ggctacactc ttaagagagt

22261 agatggtaag tcaatgacaa tacctaaccc tgaaaaagtt aaattatttc ttaaaaatat

22321 tcggcttaaa ataaagaaat gcaattcacg agaggatata atagcgctta actctgttat

22381 taggggttgg gccaactatt ataaacatgt ctcgtcttct aatgtgttta gatatcttag

22441 atatcaaata catcaatgcc tattgagttg gggtatgaag aagttacata ctcactctat

22501 ttcgagtgta tactcaaaat actttatcaa ggtgaaatca acatttcact ttgggtataa

22561 agaaggtaag aaatcttatc ttctgtatga tatagcttca actaaaatat catactataa

22621 atctaaaata cgttagtata tttattttcc ttgatataac attttggcta aagaaatata

22681 tttttatgag aataattgtt gaattatgta tttgagggag ccgtatgaat tagaaatttt

22741 catgtacggt tctgaccggg ggaaaataag agattatcta cctatcggac

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[intron& flanking sequence]

Genbank entry, intron is marked as red

20101 gcttacttat ttaaaataag gacagttata atatgatagt tttactggga aggtaatatt

20161 ataaaaaata actaatatgt ctatattaga aaaatataaa aaaaataatt tattaaaaaa

20221 aaaaaatata ttaaatttaa tttaattaaa tataaaaaaa ataagatatc attaacttag

20281 ttttaatata atatattaag aaaaatcact aagatatata aaaaaagtat ataaataatt

20341 ataataatat aatgatattt aaataaaaag actgacaagt ctaaatagta tttacgtata

20401 gtataatgaa caattgtaga ttaagtgagt cgcaatgata acggataagg tacgctaggg

20461 ataacagcct aatattgtgt gagagttcat atcgtaaaca atgattggga cctcgatgtc

20521 ggctcaacct atcctacagg atgtaaaaat ttgaaagggt ttgactgttc gtcaattaaa

20581 aggttacgtg agctgggtgt gcgacaagaa gttctatgtt aaaatatgga gaatacccat