Chara vulgaris nad3.I2

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

Note: This intron sequence occurs on the reverse complement of the original

GenBank sequence. Therefore, all sequences below are reverse complements of

the GenBank sequence.

3' end

gggcgac cgtttgagtc accgtatgaa

42901 ctgctcattt gtacaatcaa tatgtcaaat aaatgagacg ttgtagaagt ccacaacgag

42961 acggacacga cttattcaac gccgttgaag atactcgtag tgaagaactc gctgcgaaga

43021 ctcaagctcg tcgtgaaagg ggatcactgg gaatagccag cccttggttg aaccccgacc

43081 gtgtctctga tacgcagctg aacggaatac tcgtgaacgt gagatgctgg tgggataatt

43141 gcccggacgt gttcggcaag gccgatccgc tacaagatcg atcgcacaac gtcttccctc

43201 gtacagcgac gtcgaaaatc gtatgtgcca ggacattgag gaaaccaggc cacgaagtgg

43261 caacagcatc agaagcgcac tgcgtactca attcaaccca gagagcatac ggtggaaccg

43321 gtgaaccatt cgaaaaaaaa gagagagatt cgaatggggc agagggctcg tagtacctac

43381 cacacttcgc acctaccggc agaggggaag gagcctaaat cgacggactt ggaccgcgaa

43441 accaagcacg tcgcatactt gagagttaag gacacttctt cgtgtgttgt acgctcgacg

43501 aatgggacta agcagggcgc tagccagact tctgaggcct ctgctttgac atgcaccgat

43561 attcataacc taaggagcgc tagctatgaa gaatttcggg ccagtggcct attcagcagt

43621 ctcatgaaag acataaatct atggattgct gcctataaga agctagcgcc taatccaggc

43681 tcccacgaag gtggcgctgg gggagatggc acctctatga agtcactcga ggcttccagg

43741 ccgaaggaaa acgctcttgt gagcctccag gcacaaagtg cagcaattcg gacatctccg

43801 ccgaattgct ggacacgaag tgttgaggta atgcgtacta ttctagaaac agtgtgtgaa

43861 ccacgcttcc tgaaatgttc caactctggc gagcctggct attcgcaaca tacttgtatg

43921 aaacagatac gccgagattt tcgaggggcg gctgtctggt acatagaagg ccgaaggtcc

43981 aaatgcttcg atacaatcga ccaccagatg agtcttctgc ataagaagat tcaagatgat

44041 agattcttga ctctagtgcg aaggcacctg tataagataa agcggcctct tatacggtcg

44101 gtcgctttat cgaaagacga ccacattggt cggcccttcg gccctcttct atccaatgtg

44161 gtacttcatg agcttgagaa atttgtcatg cgactgaaga gcattgccga tagagggtcg

44221 tcgatagaga gggcaaccgc cgcaggttgc ggaaaaaaag gctcactgcg aagatccggc

44281 ggcgatcgga gagcagcctt caagacgcgc cttcggccct cgcgttcggc tcgccagagt

44341 cattttagaa ggattcacta tgttcgctat gcggacgact tcctgattgg agtcatcgga

44401 cctagagcac tagccgatag aatacgaagt ctagtggcac gatttctcga agtaaggctt

44461 agccttcggc ccttcttttc aaagacgctc ataactcgag ctaaaggctc ccacgggccg

44521 gcttttctcg ggtttcttat cagctcctcc tccaggctct cccacttcgt ggccttcgaa

44581 tatcgacgaa catacaatgg gaaaagtcga attgtacgcg ttcaacgagc aggtcacgtc

44641 actttactcg ttgatatgcg gaaagtgatt caccgcctgg cagctttagg tttttgtgac

44701 aaatcgggga accctaaacc caacttcttt tatttccaag atccgcagag aaactctgtg

44761 tcacgtatct ccggacttct ccgcggtctc gccaattact atcacatagc agactcgaag

44821 cgccaatgca tagctagatt gtcatatata cttcgccatt ctttggctat ggtatatgct

44881 gccaaattca agcttcgctc acgggctaag gtctttgcta tagcaggcaa agacctaaag

44941 aaaccacgca atggctggtt ttcaaccagg ttccgaaatc cagactccca gctcgctccg

45001 tttactcttt cgagccacat ttcttcgtag aggctcgctc gagcagaaag gtctggccag

45061 agtggttgga gacactcgaa gagactcgcc agagtcgtaa ctgtatgata tcgggcgact

45121 tcctgattgg agtcatccat catgaggtta ttcattcatt actcaagttg gaaagccgtg

45181 tgatgtacga catcttgcac ggtttggtgg gcactttagt agactggacg ggtgaacggg

45241 caaccgttgc agtggaactt ttgacccaat

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

ggttgga attctatata gtaaccccaa agacttgcct agaagaattc

42421 gaagcactta ctcgaggaat tggtccccgg gtcatgaaaa agtgctggtc aaacttgcta

42481 gaatagaggc tcccatgtcc caagacgaaa aacagaaact cttttttcta gtacaaaaca

42541 taattagtcg agtacgagat ccaatgtctc gtctttcttg cgtggactca gtcaggcctt

42601 cggcttcgcc cacttcgtgt cctgaggttg cctggaagtc cacgggggaa actggtcact

42661 tgatccagtg aaaccccgcc aaataggtaa gagaactcaa agcaagtaga gttagtgagc

42721 cgtgtaatgg gcaactattt cgcacggttc ggagggcact tcagtaagtc tgtgcaaatc

42781 agattgaagt tttgacccct atcccttttg atgatgccag aagtcgtttt gatatacgat

42841 tttaccttgt gtctatttta tttcttattt ttggggcgac cgtttgagtc accgtatgaa