[Back to mitochondrial introns by organism] [Back to home page]

Information of Chara vulgaris nad3.I2  intron   (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

 

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts 

off all of the exon-encoded and some of the intron-encoded polypeptide. This 

situation is indicated here by blue-coded ORF that extends to the start of 

the intron rather than by a translation start approximately 500 bp after the 

start of the intron.

 

Note:  This intron sequence occurs on the reverse complement of the original

GenBank sequence.  Therefore, all sequences below are reverse complements of

the GenBank sequence.

 

3' end

                                          gggcgac cgtttgagtc accgtatgaa 

42901 ctgctcattt gtacaatcaa tatgtcaaat aaatgagacg ttgtagaagt ccacaacgag 

42961 acggacacga cttattcaac gccgttgaag atactcgtag tgaagaactc gctgcgaaga 

43021 ctcaagctcg tcgtgaaagg ggatcactgg gaatagccag cccttggttg aaccccgacc 

43081 gtgtctctga tacgcagctg aacggaatac tcgtgaacgt gagatgctgg tgggataatt 

43141 gcccggacgt gttcggcaag gccgatccgc tacaagatcg atcgcacaac gtcttccctc 

43201 gtacagcgac gtcgaaaatc gtatgtgcca ggacattgag gaaaccaggc cacgaagtgg 

43261 caacagcatc agaagcgcac tgcgtactca attcaaccca gagagcatac ggtggaaccg 

43321 gtgaaccatt cgaaaaaaaa gagagagatt cgaatggggc agagggctcg tagtacctac 

43381 cacacttcgc acctaccggc agaggggaag gagcctaaat cgacggactt ggaccgcgaa 

43441 accaagcacg tcgcatactt gagagttaag gacacttctt cgtgtgttgt acgctcgacg 

43501 aatgggacta agcagggcgc tagccagact tctgaggcct ctgctttgac atgcaccgat 

43561 attcataacc taaggagcgc tagctatgaa gaatttcggg ccagtggcct attcagcagt 

43621 ctcatgaaag acataaatct atggattgct gcctataaga agctagcgcc taatccaggc 

43681 tcccacgaag gtggcgctgg gggagatggc acctctatga agtcactcga ggcttccagg 

43741 ccgaaggaaa acgctcttgt gagcctccag gcacaaagtg cagcaattcg gacatctccg 

43801 ccgaattgct ggacacgaag tgttgaggta atgcgtacta ttctagaaac agtgtgtgaa 

43861 ccacgcttcc tgaaatgttc caactctggc gagcctggct attcgcaaca tacttgtatg 

43921 aaacagatac gccgagattt tcgaggggcg gctgtctggt acatagaagg ccgaaggtcc 

43981 aaatgcttcg atacaatcga ccaccagatg agtcttctgc ataagaagat tcaagatgat 

44041 agattcttga ctctagtgcg aaggcacctg tataagataa agcggcctct tatacggtcg 

44101 gtcgctttat cgaaagacga ccacattggt cggcccttcg gccctcttct atccaatgtg 

44161 gtacttcatg agcttgagaa atttgtcatg cgactgaaga gcattgccga tagagggtcg 

44221 tcgatagaga gggcaaccgc cgcaggttgc ggaaaaaaag gctcactgcg aagatccggc 

44281 ggcgatcgga gagcagcctt caagacgcgc cttcggccct cgcgttcggc tcgccagagt 

44341 cattttagaa ggattcacta tgttcgctat gcggacgact tcctgattgg agtcatcgga 

44401 cctagagcac tagccgatag aatacgaagt ctagtggcac gatttctcga agtaaggctt 

44461 agccttcggc ccttcttttc aaagacgctc ataactcgag ctaaaggctc ccacgggccg 

44521 gcttttctcg ggtttcttat cagctcctcc tccaggctct cccacttcgt ggccttcgaa 

44581 tatcgacgaa catacaatgg gaaaagtcga attgtacgcg ttcaacgagc aggtcacgtc 

44641 actttactcg ttgatatgcg gaaagtgatt caccgcctgg cagctttagg tttttgtgac 

44701 aaatcgggga accctaaacc caacttcttt tatttccaag atccgcagag aaactctgtg 

44761 tcacgtatct ccggacttct ccgcggtctc gccaattact atcacatagc agactcgaag 

44821 cgccaatgca tagctagatt gtcatatata cttcgccatt ctttggctat ggtatatgct 

44881 gccaaattca agcttcgctc acgggctaag gtctttgcta tagcaggcaa agacctaaag 

44941 aaaccacgca atggctggtt ttcaaccagg ttccgaaatc cagactccca gctcgctccg 

45001 tttactcttt cgagccacat ttcttcgtag aggctcgctc gagcagaaag gtctggccag 

45061 agtggttgga gacactcgaa gagactcgcc agagtcgtaa ctgtatgata tcgggcgact 

45121 tcctgattgg agtcatccat catgaggtta ttcattcatt actcaagttg gaaagccgtg 

45181 tgatgtacga catcttgcac ggtttggtgg gcactttagt agactggacg ggtgaacggg 

45241 caaccgttgc agtggaactt ttgacccaat

 

                                                                   

[top]


 

 

[intron& flanking sequence]

 

Genbank entry, intron is marked as red

 

                    ggttgga attctatata gtaaccccaa agacttgcct agaagaattc 

42421 gaagcactta ctcgaggaat tggtccccgg gtcatgaaaa agtgctggtc aaacttgcta 

42481 gaatagaggc tcccatgtcc caagacgaaa aacagaaact cttttttcta gtacaaaaca 

42541 taattagtcg agtacgagat ccaatgtctc gtctttcttg cgtggactca gtcaggcctt 

42601 cggcttcgcc cacttcgtgt cctgaggttg cctggaagtc cacgggggaa actggtcact 

42661 tgatccagtg aaaccccgcc aaataggtaa gagaactcaa agcaagtaga gttagtgagc 

42721 cgtgtaatgg gcaactattt cgcacggttc ggagggcact tcagtaagtc tgtgcaaatc 

42781 agattgaagt tttgacccct atcccttttg atgatgccag aagtcgtttt gatatacgat 

42841 tttaccttgt gtctatttta tttcttattt ttggggcgac cgtttgagtc accgtatgaa 

42901 ctgctcattt gtacaatcaa tatgtcaaat aaatgagacg ttgtagaagt ccacaacgag 

42961 acggacacga cttattcaac gccgttgaag atactcgtag tgaagaactc gctgcgaaga 

43021 ctcaagctcg tcgtgaaagg ggatcactgg gaatagccag cccttggttg aaccccgacc 

43081 gtgtctctga tacgcagctg aacggaatac tcgtgaacgt gagatgctgg tgggataatt 

43141 gcccggacgt gttcggcaag gccgatccgc tacaagatcg atcgcacaac gtcttccctc 

43201 gtacagcgac gtcgaaaatc gtatgtgcca ggacattgag gaaaccaggc cacgaagtgg 

43261 caacagcatc agaagcgcac tgcgtactca attcaaccca gagagcatac ggtggaaccg 

43321 gtgaaccatt cgaaaaaaaa gagagagatt cgaatggggc agagggctcg tagtacctac 

43381 cacacttcgc acctaccggc agaggggaag gagcctaaat cgacggactt ggaccgcgaa 

43441 accaagcacg tcgcatactt gagagttaag gacacttctt cgtgtgttgt acgctcgacg 

43501 aatgggacta agcagggcgc tagccagact tctgaggcct ctgctttgac atgcaccgat 

43561 attcataacc taaggagcgc tagctatgaa gaatttcggg ccagtggcct attcagcagt 

43621 ctcatgaaag acataaatct atggattgct gcctataaga agctagcgcc taatccaggc 

43681 tcccacgaag gtggcgctgg gggagatggc acctctatga agtcactcga ggcttccagg 

43741 ccgaaggaaa acgctcttgt gagcctccag gcacaaagtg cagcaattcg gacatctccg 

43801 ccgaattgct ggacacgaag tgttgaggta atgcgtacta ttctagaaac agtgtgtgaa 

43861 ccacgcttcc tgaaatgttc caactctggc gagcctggct attcgcaaca tacttgtatg 

43921 aaacagatac gccgagattt tcgaggggcg gctgtctggt acatagaagg ccgaaggtcc 

43981 aaatgcttcg atacaatcga ccaccagatg agtcttctgc ataagaagat tcaagatgat 

44041 agattcttga ctctagtgcg aaggcacctg tataagataa agcggcctct tatacggtcg 

44101 gtcgctttat cgaaagacga ccacattggt cggcccttcg gccctcttct atccaatgtg 

44161 gtacttcatg agcttgagaa atttgtcatg cgactgaaga gcattgccga tagagggtcg 

44221 tcgatagaga gggcaaccgc cgcaggttgc ggaaaaaaag gctcactgcg aagatccggc 

44281 ggcgatcgga gagcagcctt caagacgcgc cttcggccct cgcgttcggc tcgccagagt 

44341 cattttagaa ggattcacta tgttcgctat gcggacgact tcctgattgg agtcatcgga 

44401 cctagagcac tagccgatag aatacgaagt ctagtggcac gatttctcga agtaaggctt 

44461 agccttcggc ccttcttttc aaagacgctc ataactcgag ctaaaggctc ccacgggccg 

44521 gcttttctcg ggtttcttat cagctcctcc tccaggctct cccacttcgt ggccttcgaa 

44581 tatcgacgaa catacaatgg gaaaagtcga attgtacgcg ttcaacgagc aggtcacgtc 

44641 actttactcg ttgatatgcg gaaagtgatt caccgcctgg cagctttagg tttttgtgac 

44701 aaatcgggga accctaaacc caacttcttt tatttccaag atccgcagag aaactctgtg 

44761 tcacgtatct ccggacttct ccgcggtctc gccaattact atcacatagc agactcgaag 

44821 cgccaatgca tagctagatt gtcatatata cttcgccatt ctttggctat ggtatatgct 

44881 gccaaattca agcttcgctc acgggctaag gtctttgcta tagcaggcaa agacctaaag 

44941 aaaccacgca atggctggtt ttcaaccagg ttccgaaatc cagactccca gctcgctccg 

45001 tttactcttt cgagccacat ttcttcgtag aggctcgctc gagcagaaag gtctggccag 

45061 agtggttgga gacactcgaa gagactcgcc agagtcgtaa ctgtatgata tcgggcgact 

45121 tcctgattgg agtcatccat catgaggtta ttcattcatt actcaagttg gaaagccgtg 

45181 tgatgtacga catcttgcac ggtttggtgg gcactttagt agactggacg ggtgaacggg 

45241 caaccgttgc agtggaactt ttgacccaat atttagaagt tactttttta tttccttggg 

45301 cagtttcttt caataaaata ggattgtttg gattttggtc tatgatggtc tttttattga 

45361 ttttaactat tggttttgtt tatgaatgga agaagggcgc tttagattgg gaataacaca 

45421 tttgggtaat tagctcagtt ggtagagtgc ctcgtttaca ccgagagagc cagcggttca 

45481 agtccgttat tacccagatg ggaaaatagc ttagttggtt agagtgctgg tctgtcacgc 

45541 cagaagtcgc gggttcaaat cccgtttttc ccgggaggta tggctgagtg gctgaaggca 

45601 ttggtttgct aaatcaacat acaacaagat tgtatcatgg gttcaaatcc catttcctcc 

45661 gtcgggggcg tagttcaagt ggtagaacgc atgttttgca agtatgaagt tatcggttca 

45721 agtccgatcg tctccaattt ccttccccgt gagcccacgt agctcaggtg

actagat 

[top]


[ORF sequence]

 

558 a.a.

 

MGQRARSTYHTSHLPAEGKEPKSTDLDRETKHVAYLRVKDTSSCVVRSTNGTKQGASQ

TSEASALTCTDIHNLRSASYEEFRASGLFSSLMKDINLWIAAYKKLAPNPGSHEGGAG

GDGTSMKSLEASRPKENALVSLQAQSAAIRTSPPNCWTRSVEVMRTILETVCEPRFLK

CSNSGEPGYSQHTCMKQIRRDFRGAAVWYIEGRRSKCFDTIDHQMSLLHKKIQDDRFL

TLVRRHLYKIKRPLIRSVALSKDDHIGRPFGPLLSNVVLHELEKFVMRLKSIADRGSS

IERATAAGCGKKGSLRRSGGDRRAAFKTRLRPSRSARQSHFRRIHYVRYADDFLIGVI

GPRALADRIRSLVARFLEVRLSLRPFFSKTLITRAKGSHGPAFLGFLISSSSRLSHFV

AFEYRRTYNGKSRIVRVQRAGHVTLLVDMRKVIHRLAALGFCDKSGNPKPNFFYFQDP

QRNSVSRISGLLRGLANYYHIADSKRQCIARLSYILRHSLAMVYAAKFKLRSRAKVFA

IAGKDLKKPRNGWFSTRFRNPDSQLAPFTLSSHISS

[top]


[secondary structure]

 not available

 

[top]