Kluyveromyces lactis cox1.I1

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Information of Kluyveromyces lactis cox1.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgccg tttcgcttaa tttatcactg tattgaagtg ttaattgata aacacatctc

481 tgtttattca atcaatgaaa actttaccgt atcattttgg ttctgattct tagtagtaac

541 atacatagaa tttagatacg taaaccatat ggcttactca gttggggcca actcaacggg

601 gacaatagca tgccataaaa gcgctggagt aaaacagcca gtgcaaggta agaactgtcc

661 gatggctagg ttaacgaact ccttacaaga atgtttaggg ttctcattaa ctccttccca

721 ctcggggatt gtgattcatg cttgtgtatt ggaagaagag gtacacgagt taaccaaaaa

781 tgaatcatta actttaagta aaagttgaca ttcggagggc tgtacgagtt caaatggtaa

841 attaagaaat acgggattgt ccgaaagggg aaaccctggg gataacggag tcttcatagt

901 acccaaattt aatttaaata aagtgagata ttttagtact ttatctagat taaatacaag

961 gaaggaagac agtttaacgt atttaacaaa gataaatact acggattttt ctgagttaaa

1021 taaattaata gaaaataatt atgataatcc aaaaaccatt aatattagaa ttttaaaatt

1081 aatgtcagat attagaatgt tattaattgc ttataataaa attaaaagta ataaaggtaa

1141 tatatctaaa ggttctaata atattacctt agatggaatt aatatttcat atttaaataa

1201 attatgtaaa catattaata ctaatatgtt taaattttct cctgttagaa gagttgaaat

1261 tcctaaaaca tctggaggat ttagaccttt aagtgttggt aatcctagag aaaaaattgt

1321 acaagaaagt atgagaataa ttttagaaat tatttataac aatagttttt ctaattattc

1381 tcatggtttt agaccaaact tatcttgttt aacagctatt gttcactgta aaaattatat

1441 gaaacactgt aattgattta ttaaagtaga tttaaataaa tgttttgata caattccaca

1501 taatatgtta attaatgtat taaatgaaag aatcaaagat aaaggtttca ttgatttatt

1561 atataaatta ttaagagctg gatatgttga taaacataat aattatcatc atacaacttt

1621 aggaattcct caaggtagtg ttgtcagtcc tattttatgt aatattttct tagataaatt

1681 agataaatat ttagaaaata agtttgagaa tgaattcaat actggatcta tgtctaatag

1741 aagtagaaat ccaatttata atgatttatc atctaaaatt agaagatgta aattattatc

1801 taataaatta aaattgatta gattaagaga ccattaccaa agaaatttgg gatctgataa

1861 aaactttaaa agagcttgtt ttgttagata tgctgatgat attatcattg gtgtaatggg

1921 ttctcatgat gattgtaaaa atattttaaa cgatataaat aatttcttaa aagaaaattt

1981 aggtatgtct attaatatag ataaatccat tattaaacat tctaaagaag gagttagttt

2041 tttagggtat gatgtaaaag ttacaccttg agaaataaga ccttatagaa tgattaaaag

2101 aggtgataaa tttattaggg ttagacatca tactagttta gttgttaatg cccctattag

2161 aagtattgta ataaaattaa ataaaaatgg ttattgttct caaggaattg taggaaaacc

2221 cagaggggtt ggaagattaa ttcatgaaga aatgaaaacc attttaatgc attacttagc

2281 tgttggtaga ggtattataa actattatag attagctacc aattttacca cattaagagg

2341 tagaattaca tacattttat tttattcatg ttgtttaaca ttagcaagaa aatttaaatt

2401 aaatactgtt aagaaagtta ttttaaaatt cggtaaagta ttaattgatc ctaattcaaa

2461 agtaagtttt ggtattgatg attttaaaat tagacataaa ataaatataa ctgattctaa

2521 ttatactcct gatgaaattt tagatagata taaatatatg ttacctagat ctttatcatt

2581 atttagtggt atttgtcaag tttgtggttc taaacaaaat ttagaagtac atcatgtaaa

2641 aatattaaat aatgctgcca ataaaatcaa aaatgattat ttattaggta gaatgattaa

2701 gataaataga aaacaaatta ctatctgtaa aacatgtcat tttaaaattc atcaaggtaa

2761 atataatggt ccaggtttat aataattatt ttaaactatt aaacatgcgc taaacggaga

2821 gccgtatgat atgaaagtat cacgtacggt tcggagaggg ctctcttata tgattgttat

2881 tacaatcaga taggtttgct actctac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

1 gcgcgggggt aacgaattta tctataatta tataattata ataataatta tatataacta

61 attaattaat taataataaa aaacataatg tatattacat actaatcccc gcggctcccc

121 cccttcaggg ggggagccgc gggtaaatat aactaataat aatagtttat tatattatat

181 attttaaata taatataata attataaaaa taaattaatg atcgaaagat gattatattc

241 tacaaatgct aaagatattg ctgttttata ctttatcttt gctattttct gtggtatggc

301 aggtactgcc atgtctttaa tcattagatt agagttagcc gcaccaggta atcaagtttt

361 aagcggaaat catcaattat ttaatgtctt agtagttggg catgcggtct taataatttt

421 ctgtgcgccg tttcgcttaa tttatcactg tattgaagtg ttaattgata aacacatctc