Marchantia polymorpha atpA.I1

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Information of Marchantia polymorpha atpA.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

114541 tgcgccccga cgggacgtag tatgattcaa acaatggttg gaggggaagt cgctggcagg

114601 tactaccaaa ccacgacgag aagcaacccg aaagaccaga gcgctaggag gataggaaga

114661 gcggatattc acggagtcca gaagccaata aataagcctt cttcgcctgt tattaacctt

114721 gttcaatggg tgaacgcagc atcgtcgaaa tacgatgaga gctctgggta taagcatata

114781 ccttacccaa gaatccactc cggcagcgct caccttacga gacaggggcg tctactgcgt

114841 ccgagcgggg ttgttactga gggtgataag ccaaaggctt acgctctcgg tacgaggaat

114901 tattccaaag acagctttca gcctccgtta actgaaggcg tccatacgaa tgaaggtact

114961 ggaacgaatt tcgagctcct aacagggctt cgaaacagat ggaaggtgaa aacgggaaaa

115021 tatgaagaca tcttttcgct tatcgcgagg gaagataatc taatcctggc atggaacagc

115081 ataagaagca agccaggtaa cttaaccccc ggaacaactc ccgaaactct agatggtatc

115141 gacaccaagt ggttccaaga cactagttcg aaactaaaga gcgggactta caggtatgcc

115201 ccggcgagga gagttgatgt tccaaaaccc aacaaacccg gggagacgcg tcccctaaca

115261 gtttgtaacc cccgagacaa gatcattcag caagcgttct taaacgtatt gcaacccatc

115321 ttcgaaggcg gctccgtctg gcaagaaagc gagcaatcga cctacgaaaa ccactcccgg

115381 gaatacaccc aatgtcatct ctccctaacc ggaaggaaaa tatcacactt caaaggtgag

115441 gacggtagct ataccaagaa gttcctgacc aggcattggc tattaccccc tatattcctt

115501 aacgtagccc acgggttcag acctaaccga ggcgttcact cggcgcttaa agaaatcaag

115561 caattctggg gcgccccaaa ttggttcctt aagttcgcta ttaagaaggc cttcgacaat

115621 acgaaccata acctgattct aaatctcttg aagcaacacg ttgcggacca acgtgtggaa

115681 gacgagcttc ggaaaatgtt gaaggcccgc gtcatcaact tcgtgcttgg agaagaatca

115741 actatgacct taggtgtgcc tcagggttct gtcttaagtc ccttcctatt caacgtagcc

115801 atgcatcatc tggacgtgtt catgatcgat ctcaaaaaaa aacatcaggt gccctcggaa

115861 aaaataccca ataaggtgta cgtaagcgaa agacgtaaat tgctaacgtt agcaaaaaaa

115921 caagaatggg gtatcagaaa aaaactgaga gccaacaggg acttaagaaa agacctcaag

115981 cgcagggggg ttagcctttt tgaatacaag gtgaatcctc gtaacattta ttatgtccga

116041 tatgcggacg attttatcgt cggggtccag ggagataaag cctttgccaa ggacacggct

116101 acgtcgatct ctaattttat taagagtagt atgcactttg aagtctcaga gtacatattt

116161 cacaccaaaa gcggcaaaac tcctttctta gggtttcacc tatcggtcgg actccttggc

116221 ccctcggtaa agggtaaaat agcagagcgc tttgcacggc tcaagacacg aattcgaggc

116281 gcgcgcaggg gagaatataa gcaataccta aaaatggtga gcaagacgta caccaaatac

116341 tataggaagg tcctagaggg tcacctccga caggcccatc agactatgtt gtctagcaag

116401 ctcttgaaat ccggaggctt gactctggcg cgccaaagaa ctatcgacgc attggaagag

116461 acgctgaacc agatcaagaa ggaagcgcag cgaggctcgg agggccgaag gccggagtgc

116521 tttccgacgg gcattttagt atcagacccg gcggcagccc gcagggctct cgggaatccg

116581 cctgctaacc ctaggtacca agaggcagag gaggaatggg ataaggaatg ggaattcttg

116641 gtctcggctt ggggttcgag ggccctatca ctagccagga ttgagcccga caaggaggcc

116701 gacctgttca acatcatggg gagggaagac cttagcaaac tgattagtct gagggagcaa

116761 taccatagcg cgctcgagga actcctgagc agagagacct cgggcaagat ggtaaaatac

116821 gttcagggta agttcgcggc cgcaggcaga ggagaaggaa acgccaacgc tattttggct

116881 tcacagctca ctaacaatag atatcgtagt acggtttatc tggagatgcc ttattcaaaa

116941 attagagaga agctgcgatc ggttggattc attcgggacg aacagggtgc attccctaaa

117001 tccctgcccc agatcacaga gcttgaggat attcaaataa tcgatttttt taagcagaag

117061 gcctatggtc tgcttaactt ctaccaatgt gcggacaatc gatgggagct tatcaagatc

117121 gtgaattgga tgcttagata ttctctctta cacacactag cgcacaagta taacactact

117181 gtgtcaaaaa taatgggcgt atactccaaa tctccgaaag tattcattga agctgagaac

117241 cctggcgaat attctatgct cactggtttt cccaccccac tggagataaa cactagacgc

117301 aaagaattcc tcgtttcggg ggatgaaact cccgaaagct tggaaaaact ccttgacgat

117361 aggcggaccc ttctcaccca atcgaaggcg aagttcaata aatgctgtgt cgctgattgc

117421 cctgaaacta acataaagct ccatcacatt cggaagctgg taaaaaggtt caaaggcaac

117481 atcgtcacca tcaacgttaa gggcaaacgc accggaaaac aggatctgga caaggtgcgt

117541 ctttcagccc tatccagaaa acaaatcccc ctctgcccca aacatcactc cgactttcat

117601 gaaggcacca taacattgga aaacatagac agcaagtatt cgtatcctaa gaccttatat

117661 gtgggcggag aacaagggaa gttggtgaac atagaagacg tcaccaaaca acgttttctg

117721 gaaaaaaaaa aacactagtt ttttttaccc ccccttttat ccccgtcagg ggataattgc

117781 agggcctcgt tttcaccccc ggaatgttcc agtaggagcc gtatgatggg aaaccatcac

117841 gtacggttcg gtgacggcct gcgggctagt tctac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

c aacgagaact tataatagga

114061 gacagacaaa ctggaaagac cgctatagct attgatacca tattgaacca gaaacaaatc

114121 aacgcacagg gcacctctga tagtgaaaaa ttgtattgtg tatatgtagc gattggacag

114181 aaacgttcaa ccgtggcaca attagttaag attctttcag aagcgggtgc tttagaatat

114241 tccattattg tagcagccac tgcttcggat ccagctcctt tgcaattcct ggcaccatat

114301 tcaggttgtg ctatgggaga atattttaga gataatggaa tgcacgcatt aataatctat

114361 gatgatctga gtaagcaatc agtggcgtat cgccaaatgt cattattatt acgtcgacca

114421 ccaggtcgtg aggcgttccc aggagatgtg ttctatttac attctcgttt attagaaaga

114481 gccgctaaaa tgtcagacca gactggtgcg ggtagcttga ctgcgctacc tgttattgag