Podaspora anserina cox1.I4

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Information of Podaspora anserina cox1.I4 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gt gcgtcgttgt ggatattgat aggttgtact gctcttgatc cagcttgaac

43921 tatggaaata gtcataggac taattcacct attaaggttg gtgatagaga tcagttccaa

43981 taatcttcct atatattgta aatcatgtag cttaccacaa ggggaaatcc tggagggacc

44041 agagcatgct acaaaagcga tacccggact ttgagtctat gatgtattgc aagataagtt

44101 cttcatggtg gaatatattg ttagcgaggc ccaactgaac cttttggaac atatttgcgt

44161 ccatatgtta ttgttaatat tatcagatca gagtagtatt aaaggaagca ataacaagca

44221 gaatctacaa gatgaataca atacacctaa aaagaacata cactatcaag aatcaactac

44281 gagattgcct aagaagagta atctttatgg taacggagga tcaatattag gttataaccc

44341 tagaattcaa gttataacta aagtgatcca gccttcaaga tcatttatag ctgctgctgg

44401 taacggtaca gcgaatgaaa tgaaattagt gttaaaagac aaaaaatttg tcaatcttta

44461 tcaattaata tgttccaaag acttactaat tcaggcatac agaaatgtcc gaagtaatcc

44521 aggtggtatg actcctagta ttgataatat cacatatgat ggaatcaatg atgaattcct

44581 tgaaaaatta atccttgaac taaaatctga gagatttaag tttacttcgg tgaaaagagt

44641 ttatatccct aaagcaaatg gtaaaaccag acctttaggt ataccaacct ctaaggataa

44701 aatcgtgcaa gaagctatga agatattatt agaattaatc tacgaaccga tattcttgga

44761 tgtgtcccat ggatttagac ctaaaaggag ttgtcatacg gcacttcatc aaatatctaa

44821 atggaatgga actacatgaa tgttggaggg agatatcaaa ggattcttca acgaagttga

44881 tcatcaagtt ttaattaaga tcttggaaaa gaagataaag gaccagaggt tctttgactt

44941 actatgaaaa ctctttagag ctggatatat agatgatgga gttaaatata acacatatac

45001 tggagttccg caaggaggag taatatcccc agtattatcg aatatatatc tacatgaatt

45061 cgatctattc gtggaaaccc tgataaagaa atactcatcc gagaaggact ttatttcgaa

45121 ggttaacccc gtaatagtta aatactcttc taaactgtcg cggttgaatg atgaatatca

45181 aacaacaaaa gacaaagaaa ttctaaagga gatcattaag ttaagggccg aaaggaataa

45241 acttccttca aggatcagaa atggtattag agtaaggtac actagatatg cggatgactg

45301 agttattggg ataataggtg atcaagaatt agtagcaaag attaaagaag aatgtaaagc

45361 tttccttcga gatatactca aattagagtt aagcgaagaa aagacgaaaa ttacaaatat

45421 aaccgaaaaa gaagttagat tcttaggggt tgatattaaa agaaaagata gtggagaatc

45481 caaaattata caaagacagg ttaaaggaag actgataaag tccagaatta ataacaatag

45541 attatatttc tatgtacctg ttcgcgatat aattaataag cttgaaaaag caggattcat

45601 taaaacatat acatcggcaa acggaagaga aaaactcgct ccaaatgcta taacaaagtg

45661 aatattttta gaccatagat cgattctttt aagatacaat gcagtaataa gagggcttct

45721 taattactac tctttcgtag acaataagat tgcgttccac tccattgtaa attttctaat

45781 acatcactct tgtgctaaaa ctattgcaag aaaacttaat ctacctaata gggctcaagc

45841 attcaacaaa tttggcagat acttaaccgc accaggtgag ggaaaactca agcccatgga

45901 attatttact cttgacagct ttaagaagac gactagtcta ttaaaatcat atgtaactaa

45961 tcctgtcgat ccttttacaa taactaactg aagtcttagg acacaaatta acctctttga

46021 accttgctga gtgtgcggta accctgatga tatagaaatg catcatgtga aacacctcag

46081 aaagggaggg gtgaaatcca cgggtttcac cgcattgatg tcaatgctaa atagaaaaca

46141 aattccggta tgtaaaggat gtcatgtaaa aatccacaaa ggtctttaca acgatatgaa

46201 attgaatgaa ttacacgtaa aaaagaacaa ggaaaaataa agatagcatt aattcttaaa

46261 gggggagagc cgtatgcagg gaaacttgca cgtacggttc ggagggaggt ctctcgttgc

46321 cagttctaat ctattgataa ggatcacggt gcgggttatc gaccctac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

ta cagaagaagg

43381 tatatctaaa acagactctg taagaaatgg tatgaataga caaagaactt atttcaattg

43441 agatcattta aattatttaa atctataaaa aaaaatacaa ttaaatccta aattcaaggg

43501 aatgccgtta aagactgcaa attctttaat tattacttcg ctatatgcat ggaatctctc

43561 gattttggta ttaatttacc agttaacaga tacatagaca cctaattata aatttttaat

43621 aatttttaaa gttgtatttt caactgtatt agtcgtaaca tttgtgtata catgggagga

43681 atgtgcagga aaccaaaata atatttttta ttatgagtag gaccctcaga gactacacgc

43741 gaggcccctt aaatacagat ttatttaagg gtgaagacat agtccatagt ggtatgaaaa

43801 tactacccta aggatatata aatccttaga ttaatgattc cctagactta ataatatcag

43861 tttctgatgt gcgtcgttgt ggatattgat aggttgtact gctcttgatc cagcttgaac