Podaspora curvicolla ND5.I1

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Information of Podaspora curvicolla ND5.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgct

61 gatgagcttt attttgaaat ggagatataa tctctaaaca ttggtcaaat atgtttctga

121 ctacgaaatt aggtggaggg gaaatcccaa agttgaacat agcattttcg cataatgaag

181 ggattagatc caatcatggg gatcgattag ctcttatagt caagttttct atgattaaaa

241 ctatactgtt tgaagttcat ctaccagttg tctcaagcca tggacttcag cgtgcctgag

301 ataggctgaa tgcggcaaac ctttttcttg aacttttgga tagggttatg gcctgaccgc

361 aaacgaattg cataaacaat ttcaaggtag agagtgaaca atctaaggaa aacaaaattc

421 aaaatatatg aagatcagga ttacctaaga ctagaaatag ttatggtaac agaggagtag

481 tattaccccc tgtatattat aacaatatat actgtccttt aaaaaacggg ataaggggaa

541 gaactccagg ttttaatctt agaatgctat ccactagtgc tgggagccca gtacagataa

601 aatctaacac taatgataag cttctaaagc tagctgagca ttgtaaaaat aattttaatg

661 gtcaaatcca aatggacaaa ttatatcgat taatgtatga ttcagcacta tatgagttgg

721 cgtataaaaa gctaggcgca agctctggag ggaatataaa tccggcaggt attaatatta

781 acccccttta tcataatcac cagcctttag taagctccgc agaagtgtta tctgaagtaa

841 ttgaaggaat tattgctgag ttgaaagatt gtagttttag atttgaagga aaaaaggtaa

901 aaaccctagg aagtagacct cttactcctt ttagagataa actggtacaa gaggtaatga

961 gaattatttt agaagttata ttcgagccaa ctttctctaa tcacagccat ggatttagac

1021 caggaagggg atgtcattcg gctttgaaag aaattaaaga aaattttgga gcatcaactt

1081 gatacttaga aggagatatt tctaaatact tcgttacttc gtcagcaagc tcctcttttg

1141 ttacttcgaa gcgcggcggc ggtaaagcgg cagtagcagc cgccgcgctc gcaagctctc

1201 aaagagtctt aatgaatata attgaagata aaattaaaga cggtaggttt acagatttaa

1261 tatgaaaagc tttaaaagct ggatattttg aatttaaaat attcaaagat tcaaatacag

1321 gtactattca aggtgatata cttagtccta ttttaagtaa catttatcta aatgaattag

1381 atagatttat tagtaagtta aaattagagt acgataaagg aattaaacct aaagtaaatc

1441 cccattataa caaactttgt aatatgaaga ataaaactct tgatgttcaa actagaatac

1501 gtatccataa gttactcttg aagactcctt attataaaac actagattct agttttaaga

1561 aattagtata tgtaagatat gctaatgttt gaattatagg tgttagagga tccaaagagg

1621 actgtaacat tttgttaaaa aaaatagaaa cattttttaa agataaatta aatatagagg

1681 gcgcaagctc tagcttgcgc aggcacaagc tcgagcttgc gtctaaaacc caatctagta

1741 taactaatgc taaaaaggcc ctattcttgg gtacggtaat atccagttgc tggcacagaa

1801 aacatcaatc ttttacttcc agtccatcag ggttcatgtt aagaaatggt agagaaatta

1861 tacttgaagc acctaaacaa ataatactgc aaaaactaaa tgaagccggt tttataaaca

1921 atgggaaacc atctcctata ttactatgac aacattataa taaggacaca ataataacat

1981 tatataatta tgtatatagg tatattaatt attatagttt tgctgaaaat atttccaaaa

2041 tttcttcatg acttcacttt atattaaaaa cttcttgtgt gaaactattg gcatccaaat

2101 ttaagttagg aactataagt aaaacttatt ttaaatttgg aaaagattta aaaggagata

2161 ataaaatcgg ttttgtggat gcgatgattt atggaataaa tacttgagac tttaagatat

2221 caactaaagg gataattcaa actctatacg ctgaaacaaa aacctctagg ggtgtagccc

2281 ccaaccccta gtcctacggg ctcgaggagc ttgcatactt atgccgacga agtatgcaga

2341 cgaagtatgc atacttcgtc gggattcata atcttagatg tggtatatgt aactctgatt

2401 ataaagtata aatacatgat gttagtggtt ttcgtgctat atatgacggc gatgctttat

2461 atagcattat atatagcgct gggcttcgta cgcgccctcc tcgtcatatg caacagaaaa

2521 aacttaggca tacctgcgaa gccatgcgaa gccatgcgaa gctacgcaaa gccatgcgaa

2581 gccgcgttaa aatttaataa aattaatggg ttaatggtta aataatgctt tatggcgaag

2641 taaacagcag aaaacaaact cctttatcta tagaatgtca tataaaatat cacaataaaa

2701 ccttgggtct gcacagtgca tagtgcactg tgcgcagctg cgctaaaaaa aattaagcgc

2761 ttaaatttat ttattatata taaaataata ataaccatta atcaagaaag ctaatgttat

2821 aaatttggtt gggagcttgc gtcctaatat tattataacc agatagtgat atcgttatat

2881 ataatgcaaa agcttagtac attaaaattg gagagccgta tgatgggaaa ctatcacgta

2941 cggttcggga aaaggtaaat atactggtaa gaggtatacg tatctagttc at

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

1 aagtagttat gattataggt atatgtttat taattggtgc tatggctaaa agtgtgcgct