Podaspora comata cox1.I1

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgcc

481 gtttaacgtg cgttttaagt ccgggggtat agaccctata agctactgtt tatgcttatt

541 aaacctactg acttatctca tgacgaaagg attgagggag tgtagcatgt cagtaaatcc

601 atatctaacg atagctatta aatcagttga gaatggagag gtaaaagctt cctatgtatt

661 aagattacta actatggtag gattatgtgt ttccgtaggg attaagatag ctatagccct

721 atattgagta ttgattgaga tatctgcaag cttgatcaaa aacagttact catttactac

781 ctcggagaga ggacatatag tttacaatgc taagggaaga cgaagactta acgtggggaa

841 ctcgggattg cctaagggaa gaaattccta tggtaacgga tccgtagtag taggtgtgtc

901 atccggtaaa tggatacata ctaaagtacg gaagtcaaag gtatctccca aatctgaggc

961 tcgcaagggt caaggatccc taggagaaat gcttatgttc aatgagagag ggcaatgtat

1021 caatgcttac gaagtaattt gcaagcttga agctctttat actgcttata taaatattaa

1081 atctgaacca ggtaatatga caccaggggt ggactcagag acactggatg gaatctctaa

1141 agaatgattt gagaaaattt cagaacttct aaaaaaagaa caattccgtt ttagaccaac

1201 tcgtagagta tacataccca aagcgaatgg gaaaatgaga cctctaggaa tcgcgtctcc

1261 cagagacaaa atagttcaag aagtctttag ggctatactt gagcaagtcc tagaaccaag

1321 gtttcacagt agctcgcatg ggttcagacc aagtagaggt tgccactctg cgctagcaac

1381 tattaggtat tggaatggtg ttaaatgatt tattgaagga gatattaaag gcttctttga

1441 taatatagat catcacattc tcgaaaaact cttagttaaa cattttcagg atcagagatt

1501 tatagatctt tactggaaaa tggttaaggc tggttatgtg gagtttgata aagataaaag

1561 ttcgataatt ggggtacctc aaggaggaat tgctagtcct atactttcaa atctagtact

1621 taatgaactt gatgaatttg ttcagaatat tgtggatgaa tttaatgaga aacttaaggg

1681 tggtaaacac acacgtaaaa atcctgcata tgttgttatt gacagcagaa taggtgcaat

1741 tacaagatta gaaagaaagc taaagctcaa gggacaagag ctggactccg ttagaaaatt

1801 agaaaggatg aagttaatca aggatagagc ttctatgcct tccatgattc ctaatcctga

1861 tctagctaag atatattatg taagatatgc ggatgattga cttattggcg ttgctggttc

1921 atctgaaata gcaagagtaa taaaggagaa aatagctact tacttgaaag tgacattaaa

1981 gttagaatta tccatggaga aaactcttat tactaatgct tctgaggata aggcctactt

2041 cttaggtact gagattcaaa gaatttcaag tgtaaagggt gaaattaaaa gatttaagaa

2101 tataaaaggt catccccaaa ggatacctac tactttcaca gtaatgaatg caccaatcaa

2161 caaactggtt acaaagttag ttgacaaagg tatagttact tggaaatcta aagttcttaa

2221 tgaggataac ctaatacctc aacccatatt aaaatgggta aatctaccaa tcagggatat

2281 tatacttaga tataagatga tcagaaatgg ttatattaat tactattcct tcgctgataa

2341 taaaccaaga ttagtactta tctactgaat actaagaaaa agcttagcca agactcttgc

2401 aactaaacta aaattaggaa cagttagaaa agtatacttg aagtttggag tcaacttgag

2461 atatgaaata ccaggtgctg aaaataaaat catagaattt acaaagggta atctattacc

2521 tacacccaaa aattttaaag gaaagactaa tttcgtagac aatcttaaag tggtagaatg

2581 atcattaagg acagttagct tttttaacta cgtctgcgcc agctgtggtg caagtgataa

2641 tctacaagtt catcatgtta aacatattag aactatagat gtcaaactta gtggttttga

2701 taagcagtta gctgctatta acaggaaaca agttactctg tgcacaagtt gtcacaataa

2761 agtccatact ggaaaatatg atggaatgtc tttaaaatat atgaaagata taagcaaacc

2821 tgagtagggc gtaagctcca actttaggtt tagataataa tattaacatt aagtaagtat

2881 ctcataataa catttgatat tagtaatcgc ataatacttt tgatggagag ccgtatgcgg

2941 tgaaagtcgc acgtacggtt cggaggagag ttgttggttt ctaaggtttc tttagactaa

3001 ggactggctg cttatcctac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

1 gagctcgaaa caataattgt tcgtctgtgt atagtggtta tatatattta tagtatatta

61 tattacgacc ttgtgtcgta ttatggtatg acgcggtggc atacgtacga agttattcgc

121 catgctcctc tttgtgttat attataacta tattaactat attactataa aaaaaaatag

181 cttatgcaag aataacaaaa aataaagttt gtctgaaaat gatgtcgatt gtcttgttgt

241 atctcaacaa aaaaataaag tagcattatt agatgaagct aacaatttaa aaaaagacaa

301 actaatatca ggaggggtat cattgtgaat cgagagatga atgttatcta caaatgctaa

361 agatataggg actctatatt taatttttgc attattttcg ggattactag gtacagcgtt

421 ctctgtatta attagaatgg agttgagcgg accaggtgtt caatatattg caggtgcgcc