Pylaiella littoralis LSU.I1

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Information of Pylaiella littoralis LSU.I1 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgaca cgaagttata tcgtacactt ccgtgaaatc cggaatcggc agtgttacgc

601 cgatattcta ccttggcatg cgtctgaagc aattcggggg tgtgaagccc aagggacaat

661 gtagccgaaa gccttgcgat tagggtgtag gagctagaat gaatctttat gtctaatgta

721 atgtgaatca atgtttgaag cttcgtaaaa ggtgtctcta gaatcgccgg gataatatac

781 cgtctactgg agaattgtgg ttaggtctga ggttttatgc tccgcagaca gtaacattaa

841 acttgccacc ggagtaaagt tggagactaa gaagataata agtgtgtaca gtgtggaacg

901 tggtaagccc tttattctct catataactg atgagtgggt ggagagcgat ctctgctatc

961 gaatagaggg taaaagaaaa gataaaaagc gaatgcctgg atgtaacctt caggataatg

1021 gtccatacca tgagatgaaa gtctgctgac ttatctaggt gtgtttaacc aacaatctgt

1081 tgtattttat tattattctt accataaagg taaaataatt gctggaattg acttgtataa

1141 tgtaagaaat gaaagcatta aataaaaagt ggaattccat agattggaaa acaaccagaa

1201 cttttgtttc tgatttacaa cagaaaatgg tggtggcgta taaaaataat aattggtcgg

1261 aagtattccg cttacaacag caactcatgc actcattcga gggtagagct actgccgtaa

1321 ggaaagtggt gtccaatgaa ggtagtaaaa ctaaagggcc tgatggtaaa acctggaaaa

1381 agtctcaaga caagtatcgg gcaatagcag atatccgtga tcatctacta acgaaatcag

1441 gctcctataa ggcaggcgcc gttcgaaggg tctggatccc taagtccagt cccggagaac

1501 tacgtcccct tggtatccct aatatgattg accgagcatt gcaagcactt gtcctatcct

1561 gtctcgatcc catcgtggaa gaaaacagtg actcgtgttc gtacggattt cggaagtatc

1621 gtagtactaa cgacgcaata cagcgtataa gattcattct cgataaagct ggggcacccc

1681 gttatatatg ggatgctgac atcagtaaat gctttgataa catttctcac acatttctta

1741 acaaggttgt gagggaaaat ctttgcagga agggttgtga gcttgtcgaa gcgtggttga

1801 aagcgccaat aatagaaaaa ggttccaaga gctacccaag tagaggcact ccacagggag

1861 gggtactttc gccattatta tgtaatatga ctctaaacgg gttagagaat gtaattcgag

1921 atggtttacc ctcgtccagt agtacggcag ggaggaaact taaagggaga tgggttgtga

1981 gatacgcgga tgattttatt atcaccaatc cgattggtaa atctcaattt atagacaacg

2041 atattcctct tataaacaaa tttatggccg atcgaggtct agagatatct gaaaagaaat

2101 ctcgaatcat agacctcgag aaagaaagtt ttaactttct aggctggaaa ataagtcaac

2161 gtaagagaaa tatttctgtc aataaggcga gcgatagcag acttgttctt gttgtcgaac

2221 ctaccaagga atctattaaa cggcttaaat cgcgtattaa attggaattc cgatctaaca

2281 agccgatagg agccttgatt aaagatttaa acccagtcct tcgaggctgg gcaaactact

2341 atcgaggatc ttatcactcc cagcaaagtt tccaatcgat tgggcactat gtttaccagt

2401 tattttggaa atgggctcaa aagaaacatt cgagtaggaa caaacaatgg atctacgaca

2461 gatatattgt aaggaccgaa aagtcgctct tggcaatagg cgtagataaa aatctacttc

2521 tgtacgacat aacccaagca aagcagataa gggttagtaa cctaaagaac aatatcaatc

2581 catatactga taatgattac tttgttaatc gtgttattct cagggatgca gataaatttc

2641 ggaaggctat ctataaactg aataaattta ggtgttttgt gtgtagagga tcactgtacg

2701 gtgatgaacc tatacacctc caccacctaa tcgctagaaa agatggtgga gagtataccc

2761 tgaaaaatat agtaccagta catgcaattt gccatgacag tattacatat gccgtaaagt

2821 aaaaatatga tgggagtttt accgccccta tcatgttatt taatagaata aacatgcttc

2881 agccgtgtgc ggtgaaagtc gcacgcacgg ttgtgagggg gggaaaatct gtgaagatct

2941 acctatcccg at

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

taataggc gtgattaatc

61 atgcaaagtg ttggcacgag gaaaacctgt gagacgccag atcacgatcc taatacggta

121 aaccggagct ataaagctcg ctgttaagca gtattaaggg gaagtgaaac atctcagtac

181 ccctgtaaac caaatcaacc gagacgtcgt tagtagtggt gagcgaaagc gataaaaggc

241 aaaacgaaat aaattgtttt aaattttaat ttaaatacaa gcaaaagagt gaagtgataa

301 taaattatct acctgagaag gtgttagtcc tgtaataatt ttttttttcg tgatagtagg

361 gtaaggcaag tttacctcac ccgagtattg ggggaccacc ctcaaagcct aaggtttttt

421 tcttaccgat agtgaacaag taccgtgagg gaaaggtgaa aaagaattgt gattgtgcaa

481 agaacctgaa attccatatt tgagtcgaag cagtttaatg caacggcata ccttttgtat

541 aagtgcgaca cgaagttata tcgtacactt ccgtgaaatc cggaatcggc agtgttacgc