Pylaiella littoralis cox1.I2

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Information of Pylaiella littoralis cox1.I2 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gt gcgccgttgc gcttgttttt

3361 ccgttacgcg ttttagtcaa atgcgtgtga attcgttatc tttaaagaaa gtcacaagtc

3421 ttcccggggt agcagtcaat aaaggctgtg gaaaagcatc gggtgacagc aggttgaggt

3481 tgaatttggg cataccaaga caacctgaga cgattctaga tatggttacg ttaagaaact

3541 tgatacgttt agctgggacc tcattatcct attggtcacc ccaaatttat gaccatgttg

3601 ttaagtggtt ggagtcatgc gtacagggct ccgaccagga taacactaac acagcacttc

3661 aaaaagaagt atttatagcg caagaaccta cgtctagaag acttaaaagt cggaaaaatt

3721 taagaactac gggatttaac ctttgtttta acaaaggaaa acggagcgtc catagtactt

3781 cgtgcatgaa ggaagggacg caggtggaca ctcctctcag cttaccccgc cggacatcat

3841 cagaaaagat tcactctata aatctggatg agtgggttat ggccacggaa ctaaagcgag

3901 aggtagaaaa atgcaagaat aaagatggca ggtatgggaa tctaattcag attatcggat

3961 ccctatctac cataaaactt gcttatttga tggtcaaaaa taatcggggc atctctgcga

4021 aaggcgtaga tgactcttcc ttggacggta taagtttaag aactctgcaa gctatgtcca

4081 acgatacgct tagtggaagg attaaattct ccccagtgcg cagggtatac ataaaaaagg

4141 agggaaaaac cgatttgaga cccctgggta ttagtagccc tcgccaaaag atcgttcaaa

4201 aatctattga aatggttcta acatctattt tcgaagaaat attcctggac tgcagccacg

4261 gctcaagaat tggtcgtagt tgtcacaccg cactaaaaaa tttacaactt aaagtaggta

4321 atgtgtcaac ttactcatgg gtggtggagg gcgatattaa gggttgtttt gataatatcc

4381 cccactccca gatcatgaaa aggataaagc aaaaagtgga ttgcctccct actatcaacc

4441 tcgttaagaa aatcctcgat gcagggtata ttcttgatga agaccttaaa aaattcggaa

4501 gaaagaatgc ccaggtattc aaacctgacg ttggtacccc gcaaggtatt atcttaagcc

4561 ccctttttag caatattgtt ctgcatgaac tggacaagtt catagaggtg atactcaagg

4621 aggaatttag taaaggtaag aaacggaaag ctaacttgga gtatagaaaa ttaagatacc

4681 aaatcaaaaa agaggacaat ttaaaaaagc acgtaagctc attgaagatt gcaagagcgt

4741 tcccgtccaa gagtatcgag gacccggact tcaaacgatt attttatgtt aggtttgttg

4801 acgattgggt cagattggtg tctgggtcgc tttcggattc tagacttatt cgggacagag

4861 tttctagaaa gctacgtgaa ttgggcttag aactcaacat ggaaaagacc aagataacat

4921 ccttgagaga aggtaaatgt cgttttcttg gtatagattt ctttattcgt aagaatacaa

4981 accaacacta caaacccgta tccctcgtga agaaaaacac caatatttca attcgtcaaa

5041 gatttactcc tcgattaatt ttcgaagccc ctatcctgga agttttaact aaactccaaa

5101 ataaaggttt cttaaagagg agcagcaagg gtgatttctt ccccattggg aagtctaatt

5161 gtatacctct cactcacccc caaatcttaa actactttaa cagccgaatc agggggatct

5221 taaattattt tagctgcgta cacaacagga acgaactatg gtctatagtt cgttttctca

5281 attattcatg cgctttaacg ctagcacgca aattcaagct taaatccttg gccaagacct

5341 ttaaaaggtt tggtaaaaac ttggagttcg taaacgaccg gggaaagaga tatcatatct

5401 acagacccga caatttaaga atgctccctt tgaacagacg ttttaaggca agtcagtttg

5461 tagacatcga tcagctgctt aacacatcgt ggacgagcag catgaccctg tcccaatttg

5521 atgaatcctg cgctatctgc ggaacacatg acaatatcga aatccatcac attaagtcta

5581 taaagaaggt tagagtgaaa actagaacct atgcacaatg gactggtggt ttatcgaaat

5641 ctatacccct atgcaggtac caccacaaga acctccatgc tggtacccta tcggcggacg

5701 aggcattaaa ggtgtcttct tataggggta gaaaattgat gaaagctaat ttgattaggt

5761 cacattaaat aatgaggaca atttttcgtt cgctggcgag ccgtatgatg ggaaactatc

5821 acgtacggtt ctgagggcaa ggtatattct aaatgccttg acccctac

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[intron& flanking sequence]

Genbank entry, intron is marked as red

ca gtccttgacg cgatatggaa caataaattg tcgcgtagca

2881 gtttaaatat ggggtgtctt gtttgtgggg aaaccccaag cgaaatgcac catgttagga

2941 agattaaaga tttaaaatct cgttatgata gtggcggtat tgcattctgg actcttcaaa

3001 tggctgctat aaaccgcaag caaatcccat tatgtaagat acatcatttg gccttacatc

3061 gtggcactct tacccactcg gaaagagaat tgcttaagga ggcaattaga aatacaaaat

3121 agccgtctag tatatatata tttttttaaa ttggattctg gaaagccgta tgaggggaaa

3181 ctttcacgta cggtttggag gaaagtcggg aagctctaag gtatttgcta tgaactctcg

3241 gctcatccta ctgattttgc caggttttgg tattgttagt catatattat caacttttgc

3301 tagaaagcct gtgttcggct atctcggcat ggtgtacggt gcgccgttgc gcttgttttt