Pylaiella littoralis cox1.I3

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Information of Pylaiella littoralis cox1.I3 intron (Format of information for each intron)

[intron sequence]

[intron with flanking sequence]

[ORF sequence]

[secondary structure]

[intron sequence]

The boundaries of the intron are marked as red and the ORF is marked as blue.

For many organellar introns, the ORF is translated in frame with the upstream

exon ORF. The precursor protein is then processed to a mature form that cuts

off all of the exon-encoded and some of the intron-encoded polypeptide. This

situation is indicated here by blue-coded ORF that extends to the start of

the intron rather than by a translation start approximately 500 bp after the

start of the intron.

3' end

gtgcgccgtc taactattta cagccttgtc tcaattaaat gagtacatac attatatccc

6241 tattcctcca aacgagaaat tgtattaaag catcagactt acctacggta ggaaactatc

6301 gggggactat agcatgtctg aaaaggaagt tgaaagagta ctttcgagct acgcctgtgt

6361 atggtcaggt taacaaacgt caaatcaaac atttcaaggg cattagaaat ggcatacctt

6421 catcctttat ggatttaagt actcgtttta gggggtcgca actttacgta gtggctgagt

6481 ccctggggat atccgacgag cagcgtagaa tatctacgat taagaaatgg acggacctaa

6541 acacaggata taggggctgt atttatagga attcgggata ccctacgtct agaaatggat

6601 atgggtacgg aggtgtcgta ttagtcgcca gaggattaaa atctctgata atggttcatg

6661 aaagtaaacg caagacgaag ggcactagcc tttttaagtc ttactcctcc cttccttcgg

6721 gccgggaaag attaggacaa ataattaaaa ttaatataga aaaccccaat catcttaacg

6781 aaagaatcct atcactggtt tcttcttatg acatgctcga ggcagcctat attaaaataa

6841 agtcaaaacc aggcaatatg accaaaggtg tagatggtaa aaccttggat ggcgttaatg

6901 tggactggtt aaagtcacta tctagagatg ttggttccgg ttcatataac ccctacctag

6961 ttcgcaggct tatgatacct aaacgcaagg ggagacgccc actgggcatt ccttctcctc

7021 gtgataagat agtacaagaa tcaatacgca cagtcctcca gtccatttat gaaccaagtt

7081 ttattgcttg ttcacacggg tttcgccccg ggcgtagttg tcacactgcg ttgaaagaag

7141 ttaagttaac cttctccaat acaacctggt ttatcgaagg ggatattgaa aaatgtttcg

7201 attcgattga ccaccgcgtc ctaagcacgc tccttgagcg tcgcatcaaa gacaagggct

7261 ttatggatct ttactggaaa atggttaagg ttggatatat gagcttcggc aaaattaacc

7321 aatccgacaa aggaacccct caaggctctg tagtaagccc tctactaagt aatatatatc

7381 tccatgagtt ggataattgg atgactagaa ggaaagaatc gtttgaaaag ggcactcgtc

7441 ggaaggcaaa ccctgtatat acaaaatatg tcagagttgc tggaggggct tcagccgcac

7501 gtcgtctgaa tattccctcc gctgacccct tggatcctaa tttcaaacga cttaggtatg

7561 tcaggtacgc tgatgatttc cttataggga ttatcggctc aaagaccgat gggatttgtc

7621 tcatcaaaga gttgaaagaa tttctccatg acatcttgaa actcgacctg aacttaacaa

7681 agaccaaatt aactcatacg atgagcgaaa agccctactt tctggggact tgggttaaaa

7741 ttattcctgt ttcaggcttc caaataaaaa agaataagag tggcaagata actcgcgtat

7801 ctagtcgtcc gcaattgcgg ttcctcttaa aacttttggt tgaccgcttg gaacgtaaag

7861 gatttcttag cgccaaaagt cacacaccaa cccgtcaagg atggcttgtg gctttcacgc

7921 cttatcagat agtcgactat tataatcgcg tctatatggg attgtcgaac tattactcct

7981 ttgctgatga ttatagtctt ctacaaagaa tacattatat actaaaaact tcctgcttcc

8041 ttaccctggc tagtaagcta agactaggta caaagaagaa agtgtatagt aaattcggga

8101 cgaatatttg tatcaaggaa aaagaaaagc ttgttggtag ctttagacct tatgtccctc

8161 ataaaccgcg gtttaatcac tcggtttatg atccgatgaa gtctatggaa gcctacttct

8221 cttttaggac caaggcctat gttcttcaat ccaagaattg ttggatttgt ggtagtttgg

8281 aaaacataga gttacatcat gtaagacacc tgcgtaagat gggtaatgtg gccaactctg

8341 actatttgct tcggcaaatg tcaaccataa acaggaaaca aattcctgtt tgtaaagctt

8401 gtcacatctc gatccacaag ggctcctaca gcggtccagc tttatcagaa ttccctggaa

8461 tttaacaact aattatttat ttaaaaaggg tgagagcccg gtgcggtgaa agtcgcacgc

8521 cgggttcggg gagaactctc tgtaactaaa atatttcggt atcacgttat ggttagtcac

8581 tccac

[top]

[intron& flanking sequence]

Genbank entry, intron is marked as red

tggtacccta tcggcggacg

5701 aggcattaaa ggtgtcttct tataggggta gaaaattgat gaaagctaat ttgattaggt

5761 cacattaaat aatgaggaca atttttcgtt cgctggcgag ccgtatgatg ggaaactatc

5821 acgtacggtt ctgagggcaa ggtatattct aaatgccttg acccctaccg atgctttcta

5881 ttggtatttt aggctttata gtttgggctc accatatgtt tacagtaggt ttggacatag

5941 atacaagagc ttattttact gcggcgacta tgattattgc agttccaaca ggtattaaaa

6001 tttttagttg gattgctact ttatgggggg gctctattcg attgaagaca ccaatgtatt

6061 ttccaatcgg catttctttc ctttttacta ttggcggttt aaccggtgtt gttttagcaa

6121 actcgggtgt tgatattgct ctccatgaca cttattacgt tgttgctcat tttcattacg

6181 gtgcgccgtc taactattta cagccttgtc tcaattaaat gagtacatac attatatccc